FC928221

Overview
NameFC928221
Unique NameFC928221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928221_ssr21 microsatellite FC928221_ssr21:21..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15077 contig Ccv1_Contig15077:13..500. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_PELCD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDG 487
            VA+V+LDGWG     ++N +  ADTP + +  +S P     + A G  VGLP +  MGNSEVGH  +GAGR   Q    + L++     +++     +        G LHL+GLLSDG
Sbjct:    9 VALVILDGWGINPVCEHNAVCQADTPRLRALLESWPH--ARIGASGRDVGLP-DGQMGNSEVGHLNIGAGRTVYQDLTRISLSIEEDTFFENTELRKVMQQVVESQGKLHLMGLLSDG 123          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_NITOC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 44/116 (37.93%), Postives = 63/116 (54.31%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLS 481
            +A+++LDGWG  +    N IH A TP  D+     P    ++RA G+ VGLP E  MGNSEVGH  LG+GR+  Q    V+ AL +G  + +        +       +H++GLLS
Sbjct:    8 LALLILDGWGYSEETASNAIHAAHTPIWDTLWDRYPHT--IIRASGAEVGLPNEQ-MGNSEVGHLNLGSGRVIYQEYTRVNRALRTGSFFTNHTLTEAVDRAVKSDKAIHILGLLS 120          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 47/122 (38.52%), Postives = 63/122 (51.64%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFE--TGTLHLIGLLSDG 487
            +N  V +VV+DG G  K    N   +A TP  D   K  P  W  ++A G  VGLP E  MGNSEVGH  +GAG+I   G  L++  L       ++ F  +    +    TLHL+GL+S G
Sbjct:    5 KNKKVILVVIDGLGLRKEKIGNAFELAKTPFFDKMFKEFP--WSFIQASGKFVGLP-EGQMGNSEVGHLNIGAGQIVYTGLSLINKDLEEKNFINNKAFLEVIEDVKKNNSTLHLMGLVSPG 123          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  128 RNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSF--ETGTLHLIGLLSDG 487
            ++ +V +++LDG+G     + N I  A+ P +D F +  P    +VR  G  VGLP +  MGNSEVGH  +GAGRI  Q    +  ++  G  ++ + F     +       LHL GLLSDG
Sbjct:    2 KDKLVMLIILDGYGINPRKEGNAIEAANKPNIDRFMREYPNT--IVRTSGMDVGLP-DGQMGNSEVGHTNIGAGRIVYQELTRITKSIQDGDFFEKKEFLDAAENCRKHNSKLHLFGLLSDG 120          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF----NYIKPSFETGT-LHLIGLLSDG 487
            VA+++LDG+        N +  A+ P  D +    P     ++A G AVGLP E  MGNSEVGH  +GAGRI  Q    +++A+  G+  ++E F    N++K   + GT LHL GLLSDG
Sbjct:    6 VALIILDGFALRDETYGNAVAQANKPNFDRYWNEYPHT--TLKACGEAVGLP-EGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETFLAAMNHVK---QHGTSLHLFGLLSDG 120          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/118 (38.98%), Postives = 62/118 (52.54%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGF--NYIKPSFETGTLHLIGLLSDG 487
            VA++++DGWG  +    N I  A TP +D   K       L+ A G  VGLP    MGNSEVGH  LGAGR+  Q    V  A+  G  +++E    N  K   +   +H++GLLS G
Sbjct:    8 VALIIMDGWGHREDTTNNAIAHAKTPVLDRLTKETTNT--LISASGMDVGLPG-GQMGNSEVGHVNLGAGRVVYQDFTRVTKAIEDGDFFENEVLVSNVDKAIKQDKAVHIMGLLSPG 122          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 44/124 (35.48%), Postives = 62/124 (50.00%), Query Frame = 2
Query:  122 LSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDG 487
            ++R   V + +LDGWG     + +    A TP  D   +  P    +    G  VGLP +  MGNSEVGH  +GAGR+ A     +DLA+  G  Y++        K     GT HL+G++SDG
Sbjct:    1 MTRPKPVVLCILDGWGISSRPEQSAPDQARTPNFDRLMRGCPHGTLVT--FGPDVGLP-KGQMGNSEVGHTNIGAGRVVAMDLGQIDLAIEDGSFYENAALGEFIRKLKASGGTAHLMGVVSDG 121          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.072e-13
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNY-IKPSFETG-TLHLIGLLSDG 487
            VA+++LDG+G+    +YN ++ A TP MD+ K+  P    L+   G  VGLP +  MGNSEVGH  LGAGRI  Q    +  A+   ++  +      I  +   G  +HL+GLLS G
Sbjct:   12 VALLILDGYGQNDDTEYNAVYSARTPVMDALKQRYPS--TLLHTDGKYVGLP-DGQMGNSEVGHMNLGAGRIVYQDFTRITKAIEDNELASNPVLTAPIDAAVAAGRAVHLLGLLSPG 126          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_PORYE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra yezoensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 45/123 (36.59%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  140 VAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIK-------PSFETGTLHLIGLLSDG 487
            + + +LDGWG     + N I +A TPT+DS  ++ P    L+ A G  VGLP +  MGNSEVGH  +G GR+  Q     +L      I  +  FN ++        +    +LHLIGL S+G
Sbjct:    9 IVLAILDGWGHTNIQQGNAIKIAKTPTIDSLIQAYPS--TLLAASGQEVGLP-KGQMGNSEVGHTTIGGGRVIQQ-----ELVKIGNSIVDNSFFNNLELNEACEYANNNKASLHLIGLCSNG 123          
BLAST of FC928221 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 2
Query:  101 KLKEHPQLSRNNIVAVVVLDGWGEYKPDKYNCIHVADTPTMDSFKKSAPERWRLVRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFN-YIKPSFETGT-LHLIGLLSDG 487
            K K HP       + + +LDGWG     + N I +A TPT+DS  ++ P    L+ A G  VGLP +  MGNSEVGH  +G GR+  Q    +  ++ +   + +   N     +  T T LHLIGL S+G
Sbjct:    3 KKKVHP-------IVLAILDGWGHSNSHQGNAIKIAKTPTIDSLLETYPN--TLLVASGEEVGLP-KGQMGNSEVGHTTIGGGRVVEQELVKIGNSIENKSFFNNVQLNCACDHAISTQTSLHLIGLCSNG 123          
The following BLAST results are available for this feature:
BLAST of FC928221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
GPMI_PELCD5.415e-1338.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NITOC5.415e-1337.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU5.415e-1338.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH5.415e-1336.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST5.415e-1340.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA67.072e-1338.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARDP7.072e-1335.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRSD7.072e-1338.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORYE9.236e-1336.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU9.236e-1336.642,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YJ14FM1 TF Citrus clementina cDNA clone KN0AAP12YJ14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928221 ID=FC928221; Name=FC928221; organism=Citrus clementina; type=EST; length=488bp
CTCTCTCTGTGTAATATCACTTGTTTGTTTGTTAGCTTTCTACGGACGCG
CGATTCGCCTTCAATCCAAAACTAATTAAGAGTGAAAGATGGATAACTGG
AAATTAAAAGAGCATCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGT
GGTGCTGGATGGCTGGGGTGAGTACAAGCCCGACAAGTATAACTGCATCC
ATGTCGCCGACACTCCCACCATGGACTCTTTCAAGAAGTCTGCACCTGAG
AGGTGGAGGTTGGTCCGAGCTCATGGTAGTGCTGTGGGGCTTCCAACTGA
AGATGACATGGGTAACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTC
GCATTTTTGCTCAAGGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGG
AAAATCTATCAAGATGAGGGATTTAATTACATTAAGCCGTCTTTTGAAAC
CGGCACATTGCACCTTATTGGGTTACTGAGTGATGGTG
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