FC928840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12 Identity = 36/161 (22.36%), Postives = 81/161 (50.31%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 + G++ D + I+G C+ G + A ++ ++ C ++ +YS L++G CK G+++ A + F + + L D V Y +++ C +G+ D+A L +M+A D + +N ++ G + + +++L + V + + I+++ L N Sbjct: 261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCN 421 HSP 2 Score: 70.0922 bits (170), Expect = 1.492e-11 Identity = 39/156 (25.00%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474 +++G + + Y ++G CK G I EA + F ++ +LD Y+ L++ C++G A +L + AD +TYN+++ L ++G+ ++A + ++GV + ++ ++ N E K V+ L M ER + P +T + +V Sbjct: 295 KKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELV 450
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 42/160 (26.25%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 1 GTRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477 G + G D + LC+NG + A+ FR + L + ++ +++ LIDGLCK G +K A+E+ + R +V T+ +I LC G +KA LFL + + P+ + +++ G + ++ ++ L RM E+ + P+ +T + +++ Sbjct: 242 GMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12 Identity = 40/156 (25.64%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 G++ + + TF+ G G + + + L + + D+ ++S +I+ LC++ +K A++ F + + + +TYNI+I + C+ G D++ LF M+ G++PD A+N + + + K ELL M + PD T S ++ L Sbjct: 455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKAL 610
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE--TSKVVELLHRMDERNVIPDASTLSIVVDLLVKN-EISL 504 + G ++ Y IDG CK EAL LF + L ++ + + LI G + A +LF + + L D YN ++ +L G + A + +ME KG+ PD V F+++ +G +++ E + V E +M ER+++P T+ +++ L N E++L Sbjct: 238 KRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNL 405
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 1 Query: 4 TRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER--NVIPDASTLS-------------IVVDLLVKNEISLNS 510 +RR D A ++G C G + EA ++ + KC D+ SY +I+ L K G+L A EL+ ++ DV N +I ALC ++ +A ++F ++ KG P+ V +N+L+ + T KV EL+ M+ + + P+ T S IV++ + KN+ + S Sbjct: 238 SRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTS 421
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 39/146 (26.71%), Postives = 70/146 (47.95%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDA 453 G D ++ LC G + EALE+ + ++D+ + + L+ G C G++++A F + R + +V TYN++I C G +D A D F DM+ + + FNTL+ G T +++L M + + + A Sbjct: 278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGA 423
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12 Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 R G + D++ Y + L K + AL ++ + + + Y+ LIDGL ++G L+ + + DVV Y +MI G++DKA ++F +M KG P+ +N+++ G E + LL M+ R P+ S +V L K Sbjct: 282 RDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12 Identity = 47/157 (29.94%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLN 507 ++ + + L + G I EA+ LF + D+ S++ ++DGL K+G++ A LF +P +++++N MI + ++D+A LF M + D ++NT++ G IRN E +K L RM E+NVI + ++ V+ +NE +LN Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPER----DFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVE-NKENEEALN 316
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12 Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 1 Query: 70 NGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE---ISLNSIPQFKSQ 531 +G A +LF + L CE + S++ L+ S +L A + F LP + I D+VTYN MI ALC G MD +F ++E G PD ++FNTL+ R + + M +N+ P+ + + V L +N+ +LN I K++ Sbjct: 135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTE 292 The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bpback to top |