FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP392_ARATH (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 36/161 (22.36%), Postives = 81/161 (50.31%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            + G++ D   +   I+G C+ G +  A ++   ++   C  ++ +YS L++G CK G+++ A + F  + +  L  D V Y  +++  C +G+ D+A  L  +M+A     D + +N ++ G      + + +++L +     V  +  +  I+++ L  N
Sbjct:  261 KEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCN 421          

HSP 2 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 39/156 (25.00%), Postives = 79/156 (50.64%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            +++G   + + Y   ++G CK G I EA + F  ++    +LD   Y+ L++  C++G    A +L   +      AD +TYN+++  L ++G+ ++A  +     ++GV  +  ++  ++     N E  K V+ L  M ER + P  +T + +V
Sbjct:  295 KKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELV 450          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 42/160 (26.25%), Postives = 82/160 (51.25%), Query Frame = 1
Query:    1 GTRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            G  + G   D       +  LC+NG +  A+  FR +  L  + ++ +++ LIDGLCK G +K A+E+   + R     +V T+  +I  LC  G  +KA  LFL +  +    P+   + +++ G  + ++ ++   L  RM E+ + P+ +T + +++
Sbjct:  242 GMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 40/156 (25.64%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            G++ +   + TF+ G    G + +   +   L +   + D+ ++S +I+ LC++  +K A++ F  +    +  + +TYNI+I + C+ G  D++  LF  M+  G++PD  A+N  +    +  +  K  ELL  M    + PD  T S ++  L
Sbjct:  455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKAL 610          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 47/168 (27.98%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE--TSKVVELLHRMDERNVIPDASTLSIVVDLLVKN-EISL 504
            + G   ++  Y   IDG CK     EAL LF  +  L  ++ +   + LI G   +     A +LF  + +  L  D   YN ++ +L   G +  A  +  +ME KG+ PD V F+++ +G +++ E   + V E   +M ER+++P   T+ +++ L   N E++L
Sbjct:  238 KRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNL 405          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 1
Query:    4 TRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER--NVIPDASTLS-------------IVVDLLVKNEISLNS 510
            +RR     D  A    ++G C  G + EA   ++ +   KC  D+ SY  +I+ L K G+L  A EL+ ++       DV   N +I ALC   ++ +A ++F ++  KG  P+ V +N+L+    +   T KV EL+  M+ +  +  P+  T S             IV++ + KN+  + S
Sbjct:  238 SRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTS 421          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 39/146 (26.71%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDA 453
            G   D       ++ LC  G + EALE+   +     ++D+ + + L+ G C  G++++A   F  + R   + +V TYN++I   C  G +D A D F DM+   +  +   FNTL+ G      T   +++L  M + + +  A
Sbjct:  278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGA 423          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            R G + D++ Y   +  L K    + AL     ++ +  +  +  Y+ LIDGL ++G L+        + +     DVV Y +MI      G++DKA ++F +M  KG  P+   +N+++ G     E  +   LL  M+ R   P+    S +V  L K
Sbjct:  282 RDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 47/157 (29.94%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLN 507
            ++ + +  L + G I EA+ LF  +       D+ S++ ++DGL K+G++  A  LF  +P      +++++N MI     + ++D+A  LF  M  +    D  ++NT++ G IRN E +K   L  RM E+NVI   + ++  V+   +NE +LN
Sbjct:  173 SWNSMVKALVQRGRIDEAMNLFERMP----RRDVVSWTAMVDGLAKNGKVDEARRLFDCMPE----RNIISWNAMITGYAQNNRIDEADQLFQVMPER----DFASWNTMITGFIRNREMNKACGLFDRMPEKNVISWTTMITGYVE-NKENEEALN 316          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  301 YTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 49/158 (31.01%), Postives = 78/158 (49.37%), Query Frame = 1
Query:   70 NGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE---ISLNSIPQFKSQ 531
            +G    A +LF  +  L CE  + S++ L+     S +L  A + F  LP  + I  D+VTYN MI ALC  G MD    +F ++E  G  PD ++FNTL+    R     +   +   M  +N+ P+  + +  V  L +N+    +LN I   K++
Sbjct:  135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTE 292          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PP392_ARATH1.033e-1222.36Pentatricopeptide repeat-containing protein At5g18... [more]
PP326_ARATH1.350e-1226.25Pentatricopeptide repeat-containing protein At4g19... [more]
PP239_ARATH1.350e-1225.64Putative pentatricopeptide repeat-containing prote... [more]
PP291_ARATH3.007e-1227.98Pentatricopeptide repeat-containing protein At3g61... [more]
PP233_ARATH3.007e-1227.72Putative pentatricopeptide repeat-containing prote... [more]
PP160_ARATH3.007e-1226.71Pentatricopeptide repeat-containing protein At2g17... [more]
PP288_ARATH3.927e-1226.88Pentatricopeptide repeat-containing protein At3g60... [more]
PP185_ARATH3.927e-1229.94Pentatricopeptide repeat-containing protein At2g35... [more]
PP293_ARATH5.129e-1226.14Pentatricopeptide repeat-containing protein At3g62... [more]
PP225_ARATH5.129e-1231.01Pentatricopeptide repeat-containing protein At3g13... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
back to top