FC928840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRT-LRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 + T I GLCK+ + EAL++ L++ + Y+ LI LC+ G L A++L G + D Y+ +I +L G+ ++ + +M KG PD V +N L+ G N++ +L M E+ + PD + ++++ + + Sbjct: 190 FGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFR 340 HSP 2 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 42/155 (27.10%), Postives = 69/155 (44.52%), Query Frame = 1 Query: 13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477 +GV Y + I LC+ G + A +L K ++D YS LI L K+GR + + D VTYN++I+ C + + A+ + +M KG+ PD +++N ++ R + + L M R PD + IV D Sbjct: 217 YGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFD 371
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444 + + + K GY+ EA LF + E +I + + ++ G K R+ AW LF +P+ +VV++ +M+ ALC DG+ + A +LF +M + V V++NTL+ G IRN + K ++ M R+V+ Sbjct: 80 WTSLLSKYAKTGYLDEARVLFEVMP----ERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-----NVVSWTVMLTALCDDGRSEDAVELFDEMPERNV----VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV 201
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480 G+A D + Y T I CK G + EA ++F ++ D +Y+ L+D KS R K A ++ + + +VTYN +I A DG +D+A +L M KG PD + TL+ G R + + + M P+ T + + + Sbjct: 274 GIAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 44/162 (27.16%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN-VIPDASTLSIVVDLLVK 489 R G+ + AY T + G C +G IV+A+ +F + + C +I +Y LI+G K G L A +++ + +VV Y M+ ALC K +A L M + AP FN + G ++ +M++++ P+ T + ++D L K Sbjct: 344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK 505 HSP 2 Score: 69.3218 bits (168), Expect = 2.545e-11 Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG---VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 ++H + Y +DGL K I EA L R + + E +Y+ L+ G C +G IA +L + D +T N++I A C GK ++A + LD+ + G PD +++ ++ G R+N V LL RM ++P +T S++++ + ++I Sbjct: 485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM-LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFILDDI 650
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 61 LCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFH--SLPRGVLIADVVTYNIMIHALCADG-----------KMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTL-SIVVDLLVKNEI 498 L + G++ EAL F ++ C+ D+ +Y+ +I+ LC+ G K A L LP D TY I+I + C G +M +A+ +F +M +G PD V +N L+ GC + N + +EL M + +P+ T S + V NEI Sbjct: 175 LGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEI 334 HSP 2 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 28 DTWAYRTFIDGLCKNGYIVEALELFRTLRI--LKCELDIPSYSCLIDGLCKSG-----------RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE-RNVIPDASTLSIVVDLLVK 489 D +AY T I+ LC+ G +A L +++ + D +Y+ LI C+ G R+ A +F + + DVVTYN +I C ++ +A +LF DM+ KG P+ V +N+ + NE +E++ M + + +P +ST + ++ LV+ Sbjct: 199 DVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVE 366
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 300 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 452
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 Y ++G C+ ++EA ++ + + DI +++ +++GL +S + A +LFH + +V +Y IMI C M+ A + F DM G+ PD + L+ G + V ELL M E+ PD T + ++ L+ ++ Sbjct: 301 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11 Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1 Query: 22 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 A D + Y ++ LC+ G A+++++ + K LD +S +ID L + G+ A LF DVV+Y + I L ++++A+ L DM+ G+ P+ + T++ G + ET KV ++L + V D +T V LL Sbjct: 416 ALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLL 569
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11 Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1 Query: 13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST-LSIVVDLLVKNEIS 501 +G D AY I LCK +EA LF + + + +Y+ +IDG CK G + + DV+TY +IH LCA G+ +A + +M+ K P+ + F L+ G + + + + M+E+ + PD++ LS+V L I+ Sbjct: 608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENIN 771
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11 Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465 + GV D Y T I GL K G + EA +T+ E D +Y+ L++G+C+ G A L + + TYN ++H LC MDK +L+ M++ GV + + TL+ +++ + ++ E+ + + DAS S Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYS 444 HSP 2 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 G D + Y T + G C EA+ +++ ++ E D +Y+ LI GL K+GR++ A ++ D TY +++ +C G+ A L +MEA+G AP+ +NTL+ G + K +EL M V +++ + +V LVK+ Sbjct: 260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418 The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bpback to top |