FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRT-LRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + T I GLCK+  + EAL++    L++      +  Y+ LI  LC+ G L  A++L      G +  D   Y+ +I +L   G+ ++   +  +M  KG  PD V +N L+ G    N++     +L  M E+ + PD  + ++++ +  +
Sbjct:  190 FGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFR 340          

HSP 2 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 42/155 (27.10%), Postives = 69/155 (44.52%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            +GV      Y + I  LC+ G +  A +L       K ++D   YS LI  L K+GR      +   +       D VTYN++I+  C +   + A+ +  +M  KG+ PD +++N ++    R  +  +   L   M  R   PD  +  IV D
Sbjct:  217 YGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFD 371          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR69_ARATH (Pentatricopeptide repeat-containing protein At1g32415, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E56 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 42/135 (31.11%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444
            + + +    K GY+ EA  LF  +     E +I + + ++ G  K  R+  AW LF  +P+     +VV++ +M+ ALC DG+ + A +LF +M  + V    V++NTL+ G IRN +  K  ++   M  R+V+
Sbjct:   80 WTSLLSKYAKTGYLDEARVLFEVMP----ERNIVTCNAMLTGYVKCRRMNEAWTLFREMPK-----NVVSWTVMLTALCDDGRSEDAVELFDEMPERNV----VSWNTLVTGLIRNGDMEKAKQVFDAMPSRDVV 201          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP362_ARATH (Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 44/156 (28.21%), Postives = 72/156 (46.15%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYI-VEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480
            G+A D + Y T I   CK G +  EA ++F  ++      D  +Y+ L+D   KS R K A ++ + +        +VTYN +I A   DG +D+A +L   M  KG  PD   + TL+ G  R  +    + +   M      P+  T +  + +
Sbjct:  274 GIAPDAYTYNTLIT-CCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKM 428          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 44/162 (27.16%), Postives = 76/162 (46.91%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN-VIPDASTLSIVVDLLVK 489
            R  G+  +  AY T + G C +G IV+A+ +F  +  + C  +I +Y  LI+G  K G L  A  +++ +       +VV Y  M+ ALC   K  +A  L   M  +  AP    FN  + G           ++  +M++++   P+  T + ++D L K
Sbjct:  344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK 505          

HSP 2 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG---VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            ++H    +   Y   +DGL K   I EA  L R + +   E    +Y+ L+ G C +G   IA +L   +       D +T N++I A C  GK ++A  + LD+ + G     PD +++  ++ G  R+N     V LL RM    ++P  +T S++++  + ++I
Sbjct:  485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM-LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFILDDI 650          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP130_ARATH (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:   61 LCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFH--SLPRGVLIADVVTYNIMIHALCADG-----------KMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTL-SIVVDLLVKNEI 498
            L + G++ EAL  F  ++   C+ D+ +Y+ +I+ LC+ G  K A  L     LP      D  TY I+I + C  G           +M +A+ +F +M  +G  PD V +N L+ GC + N   + +EL   M  +  +P+  T  S +    V NEI
Sbjct:  175 LGEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEI 334          

HSP 2 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/168 (27.38%), Postives = 82/168 (48.81%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRI--LKCELDIPSYSCLIDGLCKSG-----------RLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE-RNVIPDASTLSIVVDLLVK 489
            D +AY T I+ LC+ G   +A  L   +++   +   D  +Y+ LI   C+ G           R+  A  +F  +     + DVVTYN +I   C   ++ +A +LF DM+ KG  P+ V +N+ +      NE    +E++  M +  + +P +ST + ++  LV+
Sbjct:  199 DVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYTPLIHALVE 366          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  300 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 452          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 40/153 (26.14%), Postives = 74/153 (48.37%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498
            Y   ++G C+   ++EA  ++  +     + DI +++ +++GL +S +   A +LFH +       +V +Y IMI   C    M+ A + F DM   G+ PD   +  L+ G     +   V ELL  M E+   PD  T + ++ L+   ++
Sbjct:  301 YTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKM 453          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR46_ARATH (Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana GN=At1g16830 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/154 (27.92%), Postives = 75/154 (48.70%), Query Frame = 1
Query:   22 AADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            A D + Y  ++  LC+ G    A+++++ +   K  LD   +S +ID L + G+   A  LF          DVV+Y + I  L    ++++A+ L  DM+  G+ P+   + T++ G  +  ET KV ++L    +  V  D +T   V  LL
Sbjct:  416 ALDCYTYTVYLSALCRGGAPRAAIKMYKIIIKEKKHLDAHFHSAIIDSLIELGKYNTAVHLFKRCILEKYPLDVVSYTVAIKGLVRAKRIEEAYSLCCDMKEGGIYPNRRTYRTIISGLCKEKETEKVRKILRECIQEGVELDPNTKFQVYSLL 569          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP368_ARATH (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 45/164 (27.44%), Postives = 76/164 (46.34%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST-LSIVVDLLVKNEIS 501
            +G   D  AY   I  LCK    +EA  LF  +     +  + +Y+ +IDG CK G +         +       DV+TY  +IH LCA G+  +A   + +M+ K   P+ + F  L+ G  +   + + +     M+E+ + PD++  LS+V   L    I+
Sbjct:  608 NGHCPDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEMKGKDCYPNRITFMALIQGLCKCGWSGEALVYFREMEEKEMEPDSAVYLSLVSSFLSSENIN 771          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 42/153 (27.45%), Postives = 72/153 (47.06%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465
            +  GV  D   Y T I GL K G + EA    +T+     E D  +Y+ L++G+C+ G    A  L   +       +  TYN ++H LC    MDK  +L+  M++ GV  +   + TL+   +++ + ++  E+     +   + DAS  S
Sbjct:  292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLSDASAYS 444          

HSP 2 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 45/159 (28.30%), Postives = 78/159 (49.06%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            G   D + Y T + G C      EA+ +++ ++    E D  +Y+ LI GL K+GR++ A     ++       D  TY  +++ +C  G+   A  L  +MEA+G AP+   +NTL+ G  +     K +EL   M    V  +++  + +V  LVK+
Sbjct:  260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGMELYEMMKSSGVKLESNGYATLVRSLVKS 418          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PPR79_ARATH6.699e-1226.49Putative pentatricopeptide repeat-containing prote... [more]
PPR69_ARATH6.699e-1231.11Pentatricopeptide repeat-containing protein At1g32... [more]
PP362_ARATH6.699e-1228.21Pentatricopeptide repeat-containing protein At5g02... [more]
PP270_ARATH6.699e-1227.16Pentatricopeptide repeat-containing protein At3g48... [more]
PP130_ARATH6.699e-1230.00Pentatricopeptide repeat-containing protein At1g77... [more]
PP382_ARATH8.749e-1226.14Pentatricopeptide repeat-containing protein At5g14... [more]
PP294_ARATH8.749e-1226.14Pentatricopeptide repeat-containing protein At3g62... [more]
PPR46_ARATH1.143e-1127.92Putative pentatricopeptide repeat-containing prote... [more]
PP368_ARATH1.143e-1127.44Putative pentatricopeptide repeat-containing prote... [more]
PP161_ARATH1.143e-1127.45Pentatricopeptide repeat-containing protein At2g17... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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