FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP422_ARATH (Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 38/169 (22.49%), Postives = 84/169 (49.70%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG----VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            V ADT AY   I      G +  A  L + +  +    D+ +Y+ +I+G C +G++  AW L   + +   + + VTY+ ++  +C  G M++A +L  +ME +     ++P+ V +  ++          + + +L RM  R  +P+  T  +++  +++N+  + ++
Sbjct:  161 VCADTVAYNLVIRLFADKGDLNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRMGNRGCMPNRVTACVLIQGVLENDEDVKAL 329          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP136_ARATH (Pentatricopeptide repeat-containing protein At1g80550, mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 39/148 (26.35%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459
            GV  D ++Y  ++D +CK+G   +A++L++ ++  + +LD+ +Y+ +I  +  S  ++    +F  +       +V T+N +I  LC DG+M  A+ +  +M  +G  PD + +  L     R  + S+++ L  RM    V P   T
Sbjct:  219 GVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAYRMLDEMPKRGCQPDSITYMCLF---SRLEKPSEILSLFGRMIRSGVRPKMDT 363          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP230_ARATH (Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 41/142 (28.87%), Postives = 72/142 (50.70%), Query Frame = 1
Query:   85 EALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510
            E  ++F +   L  E+D    + LI GLC+SG L+ A +L    P+     +V+T++ +I   C  GK ++A  L   ME + + PD + FN L+ G  +     + ++LL RM  +   P+  T   V+  L+  + +L +
Sbjct:  185 EIHKIFVSAPKLGVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEA 326          

HSP 2 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 36/137 (26.28%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM 426
            GV  D       I GLC++G +  AL+L       K   ++ ++S LI G C  G+ + A++L   + +  +  D +T+NI+I  L   G++++  DL   M+ KG  P+   +  ++ G +      +  E++ +M
Sbjct:  197 GVEIDACCLNILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEKERIEPDTITFNILISGLRKKGRVEEGIDLLERMKVKGCEPNPGTYQEVLYGLLDKKRNLEAKEMMSQM 333          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP180_ARATH (Pentatricopeptide repeat-containing protein At2g32630 OS=Arabidopsis thaliana GN=At2g32630 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 45/155 (29.03%), Postives = 73/155 (47.10%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471
            ++ GV  +   Y   ++   KNG + +A +LF  +R    E D+  Y+ LI   C+ G +K A+ LF  L    L     TY  +I  +C  G+M  A  L  +M++KGV    V FNTL+ G  R     +   +   M+++    D  T + +
Sbjct:  286 KKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTI 440          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR31_ARATH (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 44/153 (28.76%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   46 TFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISL 504
            T +    K G    + EL   L       +   Y  L+DGL K+G+L+ A  +F  +    + +D    +IMI ALC   +  +A +L  D E      D V  NT++    R  E   V+ ++ +MDE+ V PD +T  I++   +K ++ L
Sbjct:  312 TLLKVYIKGGLFDRSRELLSELESAGYAENEMPYCMLMDGLSKAGKLEEARSIFDDMKGKGVRSDGYANSIMISALCRSKRFKEAKELSRDSETTYEKCDLVMLNTMLCAYCRAGEMESVMRMMKKMDEQAVSPDYNTFHILIKYFIKEKLHL 464          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP421_ARATH (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 43/164 (26.22%), Postives = 80/164 (48.78%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFH-SLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            R  G+  D   Y + I G  KN  +   L+LF  +       D+ SY+ L+    K GR   A+++ H  +    L+  + TYNI++ ALC  G  D A +LF  ++++ V P+ + +N L+ G  ++     V  ++  + +    P+A T + ++ +  K +
Sbjct:   75 REAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTK 237          

HSP 2 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 44/159 (27.67%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALE-LFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G++ D W+Y T +    K G   EA + L   + +      I +Y+ L+D LCKSG    A ELF  L   V   +++TYNI+I+ LC   ++     +  +++  G  P+ V + T++    +     K ++L  +M +     D      VV  L+K
Sbjct:  113 GLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSRVK-PELMTYNILINGLCKSRRVGSVDWMMRELKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIK 270          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP248_ARATH (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 41/161 (25.47%), Postives = 76/161 (47.20%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + +GV  DT A  + +D L K   I  A E+F  L     + D  +++ LI G CK+ +   A  +   +       DVVTY   + A C +G   + +++  +M   G  P+ V +  +M    ++ + ++ + +  +M E   +PDA   S ++ +L K
Sbjct:  231 KSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKL-FDTIKPDARTFNILIHGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSK 390          

HSP 2 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 41/179 (22.91%), Postives = 83/179 (46.37%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE---RNVIPDAST----------------LSIVVDLLVKNEISLN 507
            D   Y +F++  CK G      E+   +R   C  ++ +Y+ ++  L KS ++  A  ++  +     + D   Y+ +IH L   G+   A ++F DM  +GV  D + +NT++   + ++     + LL RM++    +  P+  T                L I++  +VKN++S++
Sbjct:  307 DVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCNPNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKMCCHKKKMKLLGILLHHMVKNDVSID 485          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP297_ARATH (Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 43/152 (28.29%), Postives = 77/152 (50.66%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            D +   T ID   K GY+  A  +F  +       +I +++ L+ GL  +  LK A  L   + +  +  D +T+N +       GK +KA D+   M+ KGVAP+ V++  +  GC +N      +++  +M E  V P+A+T+S ++ +L
Sbjct:  259 DVYVETTLIDMYIKTGYLPYARMVFDMMDAK----NIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKIL 406          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP186_ARATH (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 36/147 (24.49%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   40 YRTFIDGLCKN-GYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            Y  +I+GL K  G   EA+++F+ ++  +C+    +Y+ +I+   K+ +  ++W+L+  +       ++ TY  +++A   +G  +KA ++F  ++  G+ PD   +N LM    R        E+   M      PD ++ +I+VD
Sbjct:  231 YNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVD 377          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP124_ARATH (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 41/158 (25.95%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDL 480
            R  G+  D   Y T +      G   EA  +FRT+       D+ +YS L++   K  RL+   +L   +  G  + D+ +YN+++ A    G + +A  +F  M+A G  P+   ++ L+    ++     V +L   M   N  PDA+T +I++++
Sbjct:  239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEV 396          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PP422_ARATH1.949e-1122.49Pentatricopeptide repeat-containing protein At5g47... [more]
PP136_ARATH1.949e-1126.35Pentatricopeptide repeat-containing protein At1g80... [more]
PP230_ARATH2.545e-1128.87Pentatricopeptide repeat-containing protein At3g14... [more]
PP180_ARATH2.545e-1129.03Pentatricopeptide repeat-containing protein At2g32... [more]
PPR31_ARATH3.324e-1128.76Pentatricopeptide repeat-containing protein At1g10... [more]
PP421_ARATH3.324e-1126.22Pentatricopeptide repeat-containing protein At5g46... [more]
PP248_ARATH3.324e-1125.47Pentatricopeptide repeat-containing protein At3g22... [more]
PP297_ARATH4.342e-1128.29Pentatricopeptide repeat-containing protein At4g01... [more]
PP186_ARATH4.342e-1124.49Pentatricopeptide repeat-containing protein At2g35... [more]
PP124_ARATH4.342e-1125.95Pentatricopeptide repeat-containing protein At1g74... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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