FC928840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR81_ARATH (Pentatricopeptide repeat-containing protein At1g55630 OS=Arabidopsis thaliana GN=At1g55630 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 40/158 (25.32%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 + G + D + Y + L + AL L +R + E + ++ LIDGL ++G+L+ + DVV Y +MI + G+++KA ++F +M KG P+ +N+++ G + + LL M+ R P+ S +V+ L Sbjct: 285 KDGFSPDLYTYNILLHHLATGNKPLAALNLLNHMREVGVEPGVIHFTTLIDGLSRAGKLEACKYFMDETVKVGCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEACALLKEMESRGCNPNFVVYSTLVNNL 442
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP391_ARATH (Pentatricopeptide repeat-containing protein At5g18390, mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 38/143 (26.57%), Postives = 72/143 (50.35%), Query Frame = 1 Query: 67 KNGYIVEALELFRTL-RILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 KNG++ +A+ELF + + L C+ + Y+ L+ LC A+ L + R L D TY I+++ C+ GKM +A + +M +G P + L+ G + E++ +M + +PD T +I+++ + K+ Sbjct: 158 KNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKS 300
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP342_ARATH (Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 44/169 (26.04%), Postives = 79/169 (46.75%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513 +RHGV D +Y T I KN + ++ + + +Y+ L+D K +++ + + + D TYNIMI+ G +D+ D+ +++ G+ PD ++NTL+ + V L+ M RN+IPD T + +V L +N+ L +I Sbjct: 726 KRHGVV-DVISYNTIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDKQMEKFRSILKRMKKSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAI 893
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP196_ARATH (Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana GN=At2g40240 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11 Identity = 42/151 (27.81%), Postives = 76/151 (50.33%), Query Frame = 1 Query: 37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 AY I LCK G I +AL + + + L +Y ++ L + +++ AW + S+ + DV YN + + C DG+++ A ++ +E G +PD +++ L+LG R + + +L RM+E V ST + V+ LV+ Sbjct: 109 AYDILISRLCKLGRIDDALIVIGDMSNGRLGLTPSTYHPILCSLTRKYKIEEAWRVVESMRSKSVSMDVTAYNYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGKVEAAMAILRRMEEDGVTVLYSTHAHVITGLVE 259
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP413_ARATH (Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 45/158 (28.48%), Postives = 74/158 (46.84%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 G++A T + I L +G +EA LF LR + +Y+ L+ G K+G LK A + + + + D TY+++I A G+ + A + +MEA V P+ F+ L+ G E K ++L M V PD ++V+D K Sbjct: 299 GLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP318_ARATH (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana GN=At4g17915 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 40/151 (26.49%), Postives = 77/151 (50.99%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492 Y +D LCK GYI ALELF+ ++ + + ++ +Y+ LI+GLCKS R+ A + L + + VTY ++ ++ + LFL+M+ +G D A+ ++ I+ T + E + + + D + + +++L K+ Sbjct: 157 YNVLLDALCKCGYIDNALELFKEMQS-RFKPELMTYNILINGLCKSRRVGTAKWMLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKD 306 The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bpback to top |