FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP339_ARATH (Pentatricopeptide repeat-containing protein At4g26800 OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 44/159 (27.67%), Postives = 79/159 (49.69%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            G+  D       ID LCKN  +V ALE+ + ++      ++ +YS LI GLCKSGRL  A    H +    +  +V+T++ +I A    GK+ K   ++  M    + P+   +++L+ G   +N   + +++L  M  +   P+  T S + +   K+
Sbjct:  188 GIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKS 346          

HSP 2 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 41/150 (27.33%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465
            G++ +   Y + I GLCK+G + +A      +   K   ++ ++S LID   K G+L     ++  + +  +  +V TY+ +I+ LC   ++D+A  +   M +KG  P+ V ++TL  G  +++     ++LL  M +R V   A+T+S
Sbjct:  223 GISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVA--ANTVS 370          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP217_ARATH (Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 47/169 (27.81%), Postives = 89/169 (52.66%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKSQR 534
            D  +Y   I GL K G+  E  ELF +++   C LD  +Y+ +IDG CK G++  A++L   +        VVTY  +I  L    ++D+A+ LF + ++K +  + V +++L+ G  +     +   +L  + ++ + P+  T + ++D LVK E    ++  F+S +
Sbjct:  551 DARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMK 719          

HSP 2 Score: 78.5666 bits (192), Expect = 4.196e-14
Identity = 44/150 (29.33%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + T I G  K G +  AL L   ++    + DI  Y+  ID   K G++ +AW+ FH +    L  D VTY  MI  LC   ++D+A ++F  +E     P   A+NT+++G     +  +   LL R   +  IP     + ++  L K
Sbjct:  206 FTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRK 355          

HSP 3 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 45/161 (27.95%), Postives = 80/161 (49.69%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            +  G   DT AY   IDG CK G + +A +L   ++    E  + +Y  +IDGL K  RL  A+ LF       +  +VV Y+ +I      G++D+A+ +  ++  KG+ P+   +N+L+   ++  E ++ +     M E    P+  T  I+++ L K
Sbjct:  579 KEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCK 739          

HSP 4 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            R  G      AY   +  L K G + EAL++F  ++      ++ +Y+ LID LC++G+L  A+EL  S+ +  L  +V T NIM+  LC   K+D+A  +F +M+ K   PD + F +L+ G  +       V+  +++ E+ +  D  T SIV   L+KN
Sbjct:  335 RAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGR----VDDAYKVYEKMLDSDCRTNSIVYTSLIKN 491          

HSP 5 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 50/157 (31.85%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   25 ADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE--RNVIPDASTLSIVVDLLVK 489
            AD   Y   ID   K G +  A + F  +     + D  +Y+ +I  LCK+ RL  A E+F  L +   +     YN MI    + GK D+A+ L     AKG  P  +A+N + L C+R  +  KV E L   +E  ++  P+ ST +I++D+L +
Sbjct:  236 ADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCI-LTCLR--KMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCR 389          

HSP 6 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 42/160 (26.25%), Postives = 74/160 (46.25%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            G+  + + + + +D L K   I EAL  F++++ LKC  +  +Y  LI+GLCK  +   A+  +  + +  +    ++Y  MI  L   G + +A  LF   +A G  PD   +N ++ G    N       L      R +     T  +++D L KN+
Sbjct:  687 GLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHKND 846          

HSP 7 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 40/150 (26.67%), Postives = 71/150 (47.33%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            D     T++D + K G   +   +F  ++  +   D  SYS LI GL K+G     +ELF+S+     + D   YNI+I   C  GK++KA+ L  +M+ KG  P  V + +++ G  + +   +   L      + +  +    S ++D
Sbjct:  516 DLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLID 665          

HSP 8 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 42/176 (23.86%), Postives = 79/176 (44.89%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKSQR 534
            ++ G+  +       +D LCK+  + EA  +F  +    C  D  ++  LIDGL K GR+  A++++  +       + + Y  +I      G+ +  H ++ DM  +  +PD    NT M    +  E  K   +   +  R  +PDA + SI++  L+K   +  +   F S +
Sbjct:  404 QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMK 579          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP131_ARATH (Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 43/141 (30.50%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN 438
            G+A + + Y   ++   K     EA++L   + +   E ++ SY+ L+ G CK GR   A  LF  LP     A+VV+YNI++  LC DG+ ++A+ L  +M+    AP  V +N L+     +  T + +++L  M + N
Sbjct:  206 GLAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAMALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDRAPSVVTYNILINSLAFHGRTEQALQVLKEMSKGN 346          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP338_ARATH (Pentatricopeptide repeat-containing protein At4g26680, mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 41/155 (26.45%), Postives = 81/155 (52.26%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            R G  A   +Y T I G C+ G +  AL+L   +     + ++ +++ LI G C++ +L+ A ++F  +    +  + VTYN +I+     G  + A   + DM   G+  D + +N L+ G  +  +T K  + +  +D+ N++P++ST S ++
Sbjct:  266 RLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALI 420          

HSP 2 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 39/163 (23.93%), Postives = 80/163 (49.08%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLG-CIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            + G+  +   + T I G C+   + EA ++F  ++ +    +  +Y+ LI+G  + G  ++A+  +  +    +  D++TYN +I  LC   K  KA     +++ + + P+   F+ L++G C+R N   +  EL   M      P+  T +++V    +NE
Sbjct:  301 KSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKN-ADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNE 462          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP123_ARATH (Pentatricopeptide repeat-containing protein At1g74750 OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.442e-14
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLML--GCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            R G   +T  Y   I    +  Y+ EA+ +F  ++   CE D  +Y  LID   K+G L IA +++  +    L  D  TY+++I+ L   G +  AH LF +M  +G  P+ V FN ++      RN ET+  ++L   M      PD  T SIV+++L
Sbjct:  387 RDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETA--LKLYRDMQNAGFQPDKVTYSIVMEVL 544          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR76_ARATH (Pentatricopeptide repeat-containing protein At1g51965, mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 45/155 (29.03%), Postives = 82/155 (52.90%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471
            ++ G + D + Y   I    + G + EA+ +F  L    C+ DI SY+ LI+ L K+G +  A   F  +    L  DVVTY+ ++       +++ A+ LF +M  KG  P+ V +N L+    +N  T++ V+L  +M ++ + PD+ T +++
Sbjct:  469 KKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSITYTVL 623          

HSP 2 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 49/173 (28.32%), Postives = 81/173 (46.82%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKSQR 534
            GV  DT  Y T    L K   I    +LF  ++      DI +Y+ LI    + G +  A  +F  L R     D+++YN +I+ L  +G +D+AH  F +M+ KG+ PD V ++TLM    +         L   M  +   P+  T +I++D L KN  +  ++  +   +
Sbjct:  437 GVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK 609          

HSP 3 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 40/170 (23.53%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   13 HGVAADTWA---------YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            H +  D W+         Y + ++ LC  G  +EA+E+   +       D   Y+ +   L K  ++    +LF  + +     D+ TYNI+I +    G++D+A ++F ++E     PD +++N+L+    +N +  +       M E+ + PD  T S +++   K E
Sbjct:  392 HRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTE 561          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR49_ARATH (Pentatricopeptide repeat-containing protein At1g18900 OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 47/158 (29.75%), Postives = 77/158 (48.73%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483
            R G   +T  Y   I    +  Y+ EA+ +F  ++   C+ D  +Y  LID   K+G L IA +++  +  G L  D  TY+++I+ L   G +  AH LF +M  +G  P+ V +N +M    +       ++L   M      PD  T SIV+++L
Sbjct:  392 RDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVL 549          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP432_ARATH (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 45/157 (28.66%), Postives = 79/157 (50.32%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            +R+GV      Y   IDGLCKNG++ EA+ L   +     + DI +YS LI+G CK GR K A E+   + R  L  + + Y+ +I+  C  G + +A  ++  M  +G   D   FN L+    +  + ++  E +  M    ++P+  +   +++
Sbjct:  395 KRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 551          

HSP 2 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 43/161 (26.71%), Postives = 82/161 (50.93%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            + G A     Y T +   CK G    A+EL   ++    + D+ +Y+ LI  LC+S R+   + L   + + ++  + VTYN +I+    +GK+  A  L  +M + G++P+ V FN L+ G I      + +++ + M+ + + P   +  +++D L KN
Sbjct:  221 KSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKN 381          

HSP 3 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 43/155 (27.74%), Postives = 75/155 (48.39%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV-DLLVKNEIS 501
            Y   I    + G I ++LE+FR + +      + + + ++  + KSG     W     + +  +  DV T+NI+I+ LCA+G  +K+  L   ME  G AP  V +NT++    +       +ELL  M  + V  D  T ++++ DL   N I+
Sbjct:  126 YDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIA 280          

HSP 4 Score: 71.2478 bits (173), Expect = 6.699e-12
Identity = 42/149 (28.19%), Postives = 72/149 (48.32%), Query Frame = 1
Query:   34 WAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG-VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            + Y + + GLCK G++ EA +  ++L  +   +D   Y+ L+  +CKSG L  A  LF  + +  ++ D  TY  +I  LC  GK   A     + EA+G V P+ V +   + G  +  +    +    +MD     PD  T + ++D
Sbjct:  579 FTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMID 727          

HSP 5 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            GV AD   Y   I  LC++  I +   L R +R      +  +Y+ LI+G    G++ IA +L + +    L  + VT+N +I    ++G   +A  +F  MEAKG+ P  V++  L+ G  +N E         RM    V     T + ++D L KN
Sbjct:  258 GVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKN 416          

HSP 6 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 42/153 (27.45%), Postives = 73/153 (47.71%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            +  D   +   I+ LC  G   ++  L + +        I +Y+ ++   CK GR K A EL   +    + ADV TYN++IH LC   ++ K + L  DM  + + P+ V +NTL+ G     +     +LL+ M    + P+  T + ++D
Sbjct:  189 ICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALID 341          

HSP 7 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 41/158 (25.95%), Postives = 72/158 (45.57%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G   D + +   +  LCK G + EA E  R +       +  S+ CLI+G   SG    A+ +F  + +        TY  ++  LC  G + +A      + A   A D V +NTL+    ++   +K V L   M +R+++PD+ T + ++  L +
Sbjct:  503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCR 660          

HSP 8 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 40/158 (25.32%), Postives = 76/158 (48.10%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G+     +Y   +DGLCKN     A   +  ++     +   +Y+ +IDGLCK+G L  A  L + + +  +  D+VTY+ +I+  C  G+   A ++   +   G++P+ + ++TL+  C R     + + +   M       D  T +++V  L K
Sbjct:  363 GLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCK 520          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP328_ARATH (Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.213e-14
Identity = 48/159 (30.19%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS-IVVDLLVKNEIS 501
            D +AY   I  L   G +  +L ++  +R  + + D+ +Y  L+ GLCK GR++  +ELF  +    ++ D   Y ++I    ADGK+  A +L+ D+   G   D   +N ++ G    N+  K  +L     E  + PD  TLS I+V  +V N +S
Sbjct:  297 DVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETLSPIMVAYVVMNRLS 455          

HSP 2 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 39/169 (23.08%), Postives = 84/169 (49.70%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSI 513
            +  G+  ++  +   + GLCK G I E LE+ + +R   C+ D+ +Y+ +I  L   G L  +  ++  + R  +  DV+ Y  ++  LC DG++++ ++LF++M+ K +  D   +  L+ G + + +      L   + +   I D      + + ++K   S+N +
Sbjct:  255 KEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIG----IYNAVIKGLCSVNQV 419          

HSP 3 Score: 76.6406 bits (187), Expect = 1.594e-13
Identity = 44/142 (30.99%), Postives = 71/142 (50.00%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 432
            RR  +  D  AY T + GLCK+G +    ELF  ++  +  +D   Y  LI+G    G+++ A  L+  L     IAD+  YN +I  LC+  ++DKA+ LF     + + PD    + +M+  +  N  S    +L R+ E
Sbjct:  325 RRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGE 466          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR40_ARATH (Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.480e-14
Identity = 39/156 (25.00%), Postives = 76/156 (48.72%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            D  +Y T I+  C+     +A  LF  +R     +++ +Y+ LI    + G   +A +L   +    L  D + Y  ++  LC  G +DKA+ +F DM    + PD +++N+L+ G  R+   ++ ++L   M  +   PD  T   ++  L++ +
Sbjct:  324 DVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGK 479          

HSP 2 Score: 72.0182 bits (175), Expect = 3.927e-12
Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510
            R+ G+  +   Y + I    + G    A +L   +  L    D   Y+ ++D LCKSG +  A+ +F+ +    +  D ++YN +I  LC  G++ +A  LF DM+ K   PD + F  ++ G IR  + S   ++  +M ++    D      V D L+K   S+++
Sbjct:  352 RQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRD----VSDTLIKASCSMSA 515          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PP339_ARATH1.104e-1427.67Pentatricopeptide repeat-containing protein At4g26... [more]
PP217_ARATH1.104e-1427.81Pentatricopeptide repeat-containing protein At3g06... [more]
PP131_ARATH1.104e-1430.50Pentatricopeptide repeat-containing protein At1g79... [more]
PP338_ARATH1.442e-1426.45Pentatricopeptide repeat-containing protein At4g26... [more]
PP123_ARATH1.442e-1431.88Pentatricopeptide repeat-containing protein At1g74... [more]
PPR76_ARATH2.460e-1429.03Pentatricopeptide repeat-containing protein At1g51... [more]
PPR49_ARATH3.213e-1429.75Pentatricopeptide repeat-containing protein At1g18... [more]
PP432_ARATH3.213e-1428.66Pentatricopeptide repeat-containing protein At5g55... [more]
PP328_ARATH3.213e-1430.19Pentatricopeptide repeat-containing protein At4g20... [more]
PPR40_ARATH5.480e-1425.00Pentatricopeptide repeat-containing protein At1g13... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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