FC928840

Overview
NameFC928840
Unique NameFC928840
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length758
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9258 contig Ccv1_Contig9258:11..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 46/154 (29.87%), Postives = 74/154 (48.05%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            G+  +   Y   ID  C+ G +  AL     +     +L +  Y+ LI+G CK G +  A      +    L   VVTY  ++   C+ GK++KA  L+ +M  KG+AP    F TL+ G  R       V+L + M E NV P+  T +++++
Sbjct:  397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550          

HSP 2 Score: 77.7962 bits (190), Expect = 7.157e-14
Identity = 55/183 (30.05%), Postives = 81/183 (44.26%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILK---------CELDI--------------------------PSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAST 459
            G   +   Y   I+GLCK G++ EA  L   ++ +          C LDI                           +Y+ LI G C+ GR++ A EL   +    +  D +TY  MI+ LC    + KA +L+  M  KG+ PD VA+NTL+ GC    E  K  EL + M  + +IP+  T
Sbjct:  712 GCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894          

HSP 3 Score: 72.7886 bits (177), Expect = 2.302e-12
Identity = 48/182 (26.37%), Postives = 77/182 (42.31%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPD----------------ASTLSIVVDLLVKNEISLNSI 513
            G+    + Y + I+G CK G I  A      +   K E  + +Y+ L+ G C  G++  A  L+H +    +   + T+  ++  L   G +  A  LF +M    V P+ V +N ++ G     + SK  E L  M E+ ++PD                AS   + VD L K    LN I
Sbjct:  432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613          

HSP 4 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 39/146 (26.71%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            Y   I+G C+ G + +A E  + +       D  SY  LI GLC +G+   A      L +G    + + Y  ++H  C +GK+++A  +  +M  +GV  D V +  L+ G +++ +      LL  M +R + PD    + ++D
Sbjct:  545 YNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMID 690          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 42/155 (27.10%), Postives = 88/155 (56.77%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            RH   +D     T +D   K G IV+A ++F +      E D+  ++ L+    +SG    A  LF+ +    +  +V+T+N++I +L  +G++D+A D+FL M++ G+ P+ +++ T+M G ++N  + + +  L +M E  + P+A ++++ +
Sbjct:  403 RHSFESDIVLASTVMDMYAKCGSIVDAKKVFDST----VEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFLRKMQESGLRPNAFSITVAL 553          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP156_ARATH (Pentatricopeptide repeat-containing protein At2g16880 OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 46/138 (33.33%), Postives = 74/138 (53.62%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSC--LIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHR 423
            G+  D   + + I G CK G + +A E +     +K      +Y+C  L++GLCK G  + A   F++L     + D VTYN MI A C D K+ +A+DL  +ME KG+ PD   +N+ +   + + + S+  ELL +
Sbjct:  551 GLLPDDSTFNSIILGYCKEGRVEKAFEFYN--ESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV-DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKK 685          

HSP 2 Score: 74.3294 bits (181), Expect = 7.913e-13
Identity = 42/154 (27.27%), Postives = 77/154 (50.00%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            HG + D   Y T I    K G +  ALE+ R +     +++  + + ++D LCK  +L  A  L +S  +   I D VTY  +I     + K++KA +++ +M+   + P    FN+L+ G   + +T   +E    + E  ++PD ST + ++
Sbjct:  410 HGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSII 563          

HSP 3 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 45/159 (28.30%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            V  D   Y T +  + K G + +  EL   ++      +  +Y+ L+ G CK G LK A+++   + +  ++ D+ TYNI+I+ LC  G M +  +L   M++  + PD V +NTL+ GC     + +  +L+ +M+   V  +  T +I +  L K E
Sbjct:  236 VNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEE 394          

HSP 4 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 42/163 (25.77%), Postives = 79/163 (48.47%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRM-DERNVIPDASTLSIVVDLLVKNE 495
            + G   D   Y T I G  +   + +ALE++  ++ +K    + +++ LI GLC  G+ ++A E F  L    L+ D  T+N +I   C +G+++KA + + +       PD    N L+ G  +   T K +   + + +ER V  D  T + ++    K++
Sbjct:  479 KRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDK 639          

HSP 5 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 43/171 (25.15%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKS 528
            G+  +T    T +D LCK   + EA  L  +       +D  +Y  LI G  +  +++ A E++  + +  +   V T+N +I  LC  GK + A + F ++   G+ PD   FN+++LG  +     K  E  +   + +  PD  T +I+++ L K  ++  ++  F +
Sbjct:  446 GIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNT 616          

HSP 6 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 43/152 (28.29%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            + + I GLC +G    A+E F  L       D  +++ +I G CK GR++ A+E ++   +     D  T NI+++ LC +G  +KA + F  + E + V  D V +NT++    ++ +  +  +LL  M+E+ + PD  T +  + LL+++
Sbjct:  524 FNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIEEREV--DTVTYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFISLLMED 673          

HSP 7 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 35/134 (26.12%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   79 IVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLI-ADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477
            I  A E+F  +  +   L++ +++ L++G C  G+L+ A  +   +     +  D VTYN ++ A+   G++    +L LDM+  G+ P+ V +N L+ G  +     +  +++  M + NV+PD  T +I+++
Sbjct:  185 ISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILIN 318          

HSP 8 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 41/166 (24.70%), Postives = 78/166 (46.99%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELF-RTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510
            GV+ +   +   ++G C  G + +AL +  R +   K   D  +Y+ ++  + K GRL    EL   + +  L+ + VTYN +++  C  G + +A  +   M+   V PD   +N L+ G        + +EL+  M    + PD  T + ++D   +  +SL +
Sbjct:  199 GVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGLSLEA 364          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR9_ARATH (Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 45/170 (26.47%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFK 525
            G+     A+   I GLCK G + E   +F  +     + ++  Y+ LIDG  KSG ++ A  L H +       DVVTY+++++ LC +G++++A D F      G+A + + +++L+ G  +     +   L   M E+    D+   + ++D   K+     +I  FK
Sbjct:  322 GIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFK 491          

HSP 2 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDAS 456
            G   D   Y   ++GLCKNG + EAL+ F T R     ++   YS LIDGL K+GR+  A  LF  +       D   YN +I A     K+D+A  LF  M E +G       +  L+ G  + +   + ++L   M ++ + P A+
Sbjct:  392 GFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAA 539          

HSP 3 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 41/141 (29.08%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDE 432
            R G   +   Y   IDG  K+G + +A+ L   +     + D+ +YS +++GLCK+GR++ A + FH+     L  + + Y+ +I  L   G++D+A  LF +M  KG   D   +N L+    ++ +  + + L  RM+E
Sbjct:  355 RKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEE 495          

HSP 4 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 42/151 (27.81%), Postives = 72/151 (47.68%), Query Frame = 1
Query:   37 AYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            A    I    K G + E L ++R ++    E  + +Y+ L++GL  +  +  A  +F  +  G +  D+VTYN MI   C  G+  KA +   DME +G   D + + T++  C  +++    V L   MDE+ +       S+V+  L K
Sbjct:  189 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCK 339          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR77_ARATH (Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 43/161 (26.71%), Postives = 77/161 (47.83%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            +  G+    W     ID   ++GY V+  E    +    C+ D+ +Y+ LI+ LCK G+ ++A        +  LI + ++Y  +I A C   + D A  L L M  +G  PD V +  L+ G + +      V +  ++ +R V PDA+  ++++  L K
Sbjct:  302 KERGLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCK 462          

HSP 2 Score: 75.485 bits (184), Expect = 3.552e-13
Identity = 57/221 (25.79%), Postives = 91/221 (41.18%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNSIPQFKSQRXXXXXXXXXXXXXA*KPDLEDPILINTCKGVLSNVGMFLGSVHGFCLQ 678
            G   D   Y   I GL  +G++ +A+ +   L       D   Y+ L+ GLCK+GR   A  LF  +    ++ D   Y  +I      G  D+A  +F     KGV  D V  N ++ G  R+    + +  ++RM+E +++PD  T S ++D  VK +    +I  F+                            N CK    NV  +   ++GFC Q
Sbjct:  410 GCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEK------------------------NKCK---PNVVTYTSLINGFCCQ 603          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP447_ARATH (Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 45/158 (28.48%), Postives = 76/158 (48.10%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            G   D   Y   + G    G + +A +L R +R    E +   Y+ LI  LCK  R++ A ++F  + R    ADVVTY  ++   C  GK+DK + +  DM  KG+ P  + +  +M+   +     + +EL+ +M +    PD    ++V+ L  K
Sbjct:  282 GFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 439          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP298_ARATH (Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 44/149 (29.53%), Postives = 73/149 (48.99%), Query Frame = 1
Query:    4 TRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPD 450
            +R HGV  +T +Y   +   C N  +  A +LF  +       D+ SY  LI G C+ G++  A EL   +     + D ++Y  ++++LC   ++ +A+ L   M+ KG  PD V +NT++LG  R +           MD R V+ D
Sbjct:  181 SRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRA---------MDARKVLDD 320          

HSP 2 Score: 73.1738 bits (178), Expect = 1.763e-12
Identity = 40/126 (31.75%), Postives = 68/126 (53.97%), Query Frame = 1
Query:   73 GYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPD 450
            GY+ +A ELF++ R+     +  SY+ L+   C +  L IA++LF  +    ++ DV +Y I+I   C  G+++ A +L  DM  KG  PD +++ TL+    R  +  +  +LL RM  +   PD
Sbjct:  169 GYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPD 294          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 46/151 (30.46%), Postives = 82/151 (54.30%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTL-RILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            +R+ ID  C+   +  AL  F T+ R++  + ++  Y+ +++G  KSG +  A   +  + +     DV T+NI+I+  C   K D A DLF +M+ KG  P+ V+FNTL+ G + + +  + V++ + M E       +T  I+VD L +
Sbjct:  160 FRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGDMDKALRFYQRMGKERAKPDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCR 310          

HSP 2 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 39/168 (23.21%), Postives = 79/168 (47.02%), Query Frame = 1
Query:    7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS 510
            +  G   +  ++ T I G   +G I E +++   +  L C     +   L+DGLC+ GR+  A  L   L    ++     Y  ++  LC + K  +A ++  ++  KG  P  +A  TL+ G  ++  T K    + +M    ++PD+ T ++++  L  ++ S ++
Sbjct:  255 KEKGCEPNVVSFNTLIRGFLSSGKIEEGVKMAYEMIELGCRFSEATCEILVDGLCREGRVDDACGLVLDLLNKRVLPSEFDYGSLVEKLCGENKAVRAMEMMEELWKKGQTPCFIACTTLVEGLRKSGRTEKASGFMEKMMNAGILPDSVTFNLLLRDLCSSDHSTDA 422          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PPR50_ARATH (Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana GN=At1g19290 PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 47/163 (28.83%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   40 YRTFIDGLCKNGYIVEALELFRTLRILKCELDIP---SYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDA---STLSIVVDLLVKNEISLNS 510
            Y   I GLCK G + +A +LF  L  L  +  IP   +Y+ LI G   +G +  A+ L   +    +I ++VTYN +I  LC  G +D+A  L   +  KG+ P+ + +NTL+ G +++   ++ + L  +M E+ ++  +     + I  ++++  E+ L S
Sbjct:  722 YNVAIAGLCKAGKLEDARKLFSDL--LSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRLKEKMIEKGLVRGSDKQGDVDIPKEVVLDPEVKLGS 882          

HSP 2 Score: 73.9442 bits (180), Expect = 1.033e-12
Identity = 41/153 (26.80%), Postives = 77/153 (50.33%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVV 474
            GV+ +   Y + I G CK G + EA  +F  L+  K   D   Y  L+DG C++G+++ A  +  ++    +  +    N +I+  C  G++ +A  +F  M    + PD   +NTL+ G  R     + ++L  +M ++ V+P   T +I++
Sbjct:  291 GVSRNVVTYTSLIKGYCKKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILL 443          

HSP 3 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 42/160 (26.25%), Postives = 84/160 (52.50%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE 495
            GV  +T    + I+G CK+G +VEA ++F  +     + D  +Y+ L+DG C++G +  A +L   + +  ++  V+TYNI++      G       L+  M  +GV  D ++ +TL+    +  + ++ ++L   +  R ++ D  TL++++  L K E
Sbjct:  361 GVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFKLGDFNEAMKLWENVLARGLLTDTITLNVMISGLCKME 520          

HSP 4 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 46/157 (29.30%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   19 VAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489
            + AD   Y   +DG C+ G I +A+ +   +  +    +    + LI+G CKSG+L  A ++F  +    L  D  TYN ++   C  G +D+A  L   M  K V P  + +N L+ G  R      V+ L   M +R V  D  + S +++ L K
Sbjct:  327 LVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEALFK 483          
BLAST of FC928840 vs. ExPASy Swiss-Prot
Match: PP299_ARATH (Pentatricopeptide repeat-containing protein At4g01570 OS=Arabidopsis thaliana GN=At4g01570 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.082e-13
Identity = 48/175 (27.43%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEISLNS--IPQFKSQ 531
            +G   DT  Y   +DG  K   + EA +LF  +          +Y+ LIDGL ++GR +  + LF  L +     D +T++I+   LC +GK++ A  L  +ME +G + D V  ++L++G  +        +L+  + E N++P+    +  V+  +K   S +    P F S+
Sbjct:  353 NGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTISSLLIGFHKQGRWDWKEKLMKHIREGNLVPNVLRWNAGVEASLKRPQSKDKDYTPMFPSK 527          

HSP 2 Score: 73.559 bits (179), Expect = 1.350e-12
Identity = 43/150 (28.67%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLS 465
            G   D   YR  I G CK+  + +A+ ++  ++      D   Y+CL+DG  K+ ++  A +LF  + +  + A   TYNI+I  L  +G+ +    LF D++ KG   D + F+ + L   R  +    V+L+  M+ R    D  T+S
Sbjct:  319 GHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIVGLQLCREGKLEGAVKLVEEMETRGFSVDLVTIS 468          

HSP 3 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 46/161 (28.57%), Postives = 77/161 (47.83%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCEL------DIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKN 492
            DTW+Y   I G    G +  AL LF+ ++            DI +Y+ LI  LC  G+ K A  ++  L       D  TY I+I   C   +MD A  ++ +M+  G  PD + +N L+ G ++  + ++  +L  +M +  V     T +I++D L +N
Sbjct:  247 DTWSYNICIHGFGCWGDLDAALSLFKEMKERSSVYGSSFGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRN 407          

HSP 4 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 1
Query:   28 DTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIPSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIV 471
            D   Y + I  LC  G   +AL ++  L++   E D  +Y  LI G CKS R+  A  ++  +     + D + YN ++       K+ +A  LF  M  +GV   C  +N L+ G  RN        L   + ++    DA T SIV
Sbjct:  288 DICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEACQLFEKMVQEGVRASCWTYNILIDGLFRNGRAEAGFTLFCDLKKKGQFVDAITFSIV 435          
The following BLAST results are available for this feature:
BLAST of FC928840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
PP437_ARATH7.157e-1429.87Putative pentatricopeptide repeat-containing prote... [more]
PP431_ARATH9.347e-1427.10Pentatricopeptide repeat-containing protein At5g55... [more]
PP156_ARATH9.347e-1433.33Pentatricopeptide repeat-containing protein At2g16... [more]
PPR9_ARATH1.221e-1326.47Pentatricopeptide repeat-containing protein At1g03... [more]
PPR77_ARATH1.221e-1326.71Pentatricopeptide repeat-containing protein At1g52... [more]
PP447_ARATH1.221e-1328.48Putative pentatricopeptide repeat-containing prote... [more]
PP298_ARATH1.221e-1329.53Pentatricopeptide repeat-containing protein At4g01... [more]
PP187_ARATH1.221e-1330.46Pentatricopeptide repeat-containing protein At2g36... [more]
PPR50_ARATH2.082e-1328.83Putative pentatricopeptide repeat-containing prote... [more]
PP299_ARATH2.082e-1327.43Pentatricopeptide repeat-containing protein At4g01... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AH06RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3AH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928840 ID=FC928840; Name=FC928840; organism=Citrus clementina; type=EST; length=758bp
GGCACGAGGCGTCATGGCGTGGCAGCTGATACCTGGGCATATAGAACCTT
TATTGATGGGCTCTGCAAGAATGGTTATATTGTAGAGGCACTTGAACTAT
TTCGTACTTTGAGAATTCTCAAGTGTGAACTTGATATTCCATCCTACAGC
TGCCTCATTGATGGATTATGTAAATCCGGCAGACTCAAAATTGCATGGGA
ACTATTTCATAGTTTGCCTCGTGGAGTCCTAATAGCAGATGTTGTAACAT
ATAACATCATGATCCATGCGCTTTGTGCTGATGGAAAAATGGACAAGGCA
CATGATTTGTTTCTTGATATGGAAGCAAAAGGTGTAGCACCCGATTGTGT
CGCATTTAACACGCTGATGCTAGGTTGCATCCGCAATAATGAGACATCAA
AAGTTGTTGAACTCCTTCACAGAATGGATGAGAGAAATGTGATACCAGAT
GCATCTACACTTTCAATTGTTGTGGACTTACTTGTAAAGAATGAAATTAG
CTTAAACTCCATTCCACAATTCAAGAGTCAAAGGTAAGTGAGTTTAATAT
TGATTTAGTCACATGTTTCTTCTGCCTGAAAACCCGATCTGGAGGATCCC
ATTCTTATTAACACGTGTAAAGGAGTGTTGTCTAATGTTGGCATGTTCCT
AGGTTCTGTCCATGGATTCTGTTTGCAGACATGGCTAACTTCTTGTCCAA
CAGATAAGTTTTAAAGTCTTTCAACTTTATGTTGTAAAATAACATTTTCA
TTATTCAA
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