FC928864

Overview
NameFC928864
Unique NameFC928864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_YEAST (60S ribosomal protein L32 OS=Saccharomyces cerevisiae GN=RPL32 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.387e-25
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  241 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 564
            R  SDR   V ENWR+ KGIDS VRR+F G +  P IGYG +KKT+   P+G K F+V NV +LE L MH +TY  EIAHN+S K R  I+ RA  L + VTN   RL
Sbjct:   19 RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_CANAL (60S ribosomal protein L32 OS=Candida albicans GN=RPL32 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.858e-24
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = -1
Query:  241 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 564
            R  SDR   V ENWR+ KGIDS VRR+F G +  PNIGYG +KKT+   P G+K ++V NV +L++L++H ++Y  EIA +VS++KR EIV +A +L V VTN   +L
Sbjct:   20 RHHSDRYHRVAENWRKQKGIDSCVRRRFRGTIPQPNIGYGSNKKTKFLNPAGYKVYLVKNVKDLDVLLLHTKSYAAEIASSVSSRKRVEIVAKAKKLGVKVTNPKGKL 127          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_CANGA (60S ribosomal protein L32 OS=Candida glabrata GN=RPL32 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 56/108 (51.85%), Postives = 70/108 (64.81%), Query Frame = -1
Query:  241 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARL 564
            R  SDR   V ENWR+ KGIDS VRR+F G +  P IGYG +KKT+   P+G K  +V N+ +LE L MH ++Y  EIAHNVS+K R  ++ RA  L V VTN   RL
Sbjct:   20 RHHSDRYHRVSENWRKQKGIDSVVRRRFRGNISEPTIGYGSNKKTKFMSPSGHKVVLVSNLKDLETLTMHTKSYAAEIAHNVSSKNRVTLLARAKALGVKVTNAKGRL 127          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_ENCCU (60S ribosomal protein L32 OS=Encephalitozoon cuniculi GN=RPL32 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.308e-21
Identity = 55/114 (48.25%), Postives = 70/114 (61.40%), Query Frame = -1
Query:  223 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 564
            R  SDR   VK +WRRP GIDS+VR++  G   MP+I Y   K+ RH LPNG +K  + N+N+L  L   NR YC EIAH V  +KR  IV RA +L + + N  ARL  + EE
Sbjct:   26 RHHSDRYKRVKPSWRRPHGIDSKVRKRCKGEREMPSIKYKKPKEIRHLLPNGLRKVRIFNINDLTPLTSLNRFYCGEIAHAVGARKRIAIVNRAKELGICLLNGNARLIPEIEE 139          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_PYRFU (50S ribosomal protein L32e OS=Pyrococcus furiosus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   K  R   P+G+++ +VHNV ELE L    +     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLN 127          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_PYRHO (50S ribosomal protein L32e OS=Pyrococcus horikoshii GN=rpl32e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 40/90 (44.44%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   +  R   P+G+++ ++HNV ELE L    R     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELERL--DPRRQAARIAHTVGKKKRIEILKRAEELGIKVLN 127          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_TRIHA (60S ribosomal protein L32 OS=Trichoderma harzianum GN=rpl32 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  304 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELL----MMHNRTYCVEIAHNVSTKKR 564
            R QSDR   V  +WR+PKGID RVRR+F G + MP IGYG +KKTR   P+G   F +HN   L       M        EIA  VS++KR
Sbjct:   20 RHQSDRFDRVGSSWRKPKGIDGRVRRRFRGTIRMPKIGYGSNKKTRFLTPSGHNAF-LHNARTLSCAAGCSMQSTDPSAAEIATPVSSRKR 109          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_METKA (50S ribosomal protein L32e OS=Methanopyrus kandleri GN=rpl32 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  256 RPQSDRKISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 564
            R +  R   + E WRRPKG  S++RRK      MPN GYG  KK R   P+G+++ +V+N  +LE   +  +     IA  V  +KR+EI+E+A +L +VV N
Sbjct:   30 RQEWHRYKKLGEKWRRPKGRHSKMRRKLKSKPKMPNPGYGSPKKVRGLHPSGYEEVLVYNPKDLE--KIDPKRQAARIASRVGRRKRQEILEKAEELGIVVLN 130          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_PYRAB (50S ribosomal protein L32e OS=Pyrococcus abyssi GN=rpl32e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   +  R   P+G+++ ++HNV ELE L    +     IAH V  KKR EI++RA +L + V N
Sbjct:   40 WRRPKGIDSKMRLKLKGKPRSPSIGWSSPRLVRGLHPSGYEEVLIHNVKELEKL--DPKRQAARIAHTVGKKKRIEILKRAQELGIKVLN 127          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULSO (50S ribosomal protein L32e OS=Sulfolobus solfataricus GN=rpl32e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   KK R + P+G ++ +VHNVNEL  +        V I+ +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFYRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKKVRGFHPSGLRQVIVHNVNELVKVQNQKDNVIVTISSSVGFKKRLEILNKARELGLKVSNE 134          
The following BLAST results are available for this feature:
BLAST of FC928864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_YEAST6.387e-2553.7060S ribosomal protein L32 OS=Saccharomyces cerevis... [more]
RL32_CANAL1.858e-2450.9360S ribosomal protein L32 OS=Candida albicans GN=R... [more]
RL32_CANGA2.055e-2351.8560S ribosomal protein L32 OS=Candida glabrata GN=R... [more]
RL32_ENCCU7.308e-2148.2560S ribosomal protein L32 OS=Encephalitozoon cunic... [more]
RL32_PYRFU6.625e-1445.5650S ribosomal protein L32e OS=Pyrococcus furiosus ... [more]
RL32_PYRHO1.928e-1344.4450S ribosomal protein L32e OS=Pyrococcus horikoshi... [more]
RL32_TRIHA2.518e-1347.2560S ribosomal protein L32 OS=Trichoderma harzianum... [more]
RL32_METKA3.288e-1339.8150S ribosomal protein L32e OS=Methanopyrus kandler... [more]
RL32_PYRAB4.294e-1343.3350S ribosomal protein L32e OS=Pyrococcus abyssi GN... [more]
RL32_SULSO9.567e-1336.7950S ribosomal protein L32e OS=Sulfolobus solfatari... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CB07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928864 ID=FC928864; Name=FC928864; organism=Citrus clementina; type=EST; length=627bp
ATATGCATAATTAATAAAAGGTTTGGCCATAAACCTTAACTCCTAAGTTG
ACATAACATTAATCATGCTCCACAAAAGACAACAAATTCAAAATATCATT
CAGGTGACAAATAAAAAATACATCATAATTCAACCCTGGAAATGTTCATC
CATTCCAAAGACAACCTAGGAAACATTTGGCCAAAAGCAAACACTAACAC
AAAATATAAAAACCAATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCC
AATTTGTTGGTGACCACAACATCCAATTGTGCAGCACGCTCGACAATCTC
CTTTCTCTTCTTGGTTGATACATTGTGGGCTATCTCAACACAATAAGTCC
TGTTGTGCATCATCAAGAGTTCCAGTTCATTGACATTGTGCACAACAAAC
TTCTTGAATCCATTGGGCAGATAGTGGCGTGTTTTCTTGTCCCAACCGTA
GCCAATATTGGGCATCAAAACACATCCATTGAACTTTCTCCTGACACGTG
AATCAATACCCTTCGGCCTTCGCCAATTTTCCTTCACTGATATCTTCCTG
TCACTCTGGGGCCTCTTGAACTTCTTGAGACGCTTCTTCACTATCTTCTT
GGTCAGCAAAGGAACACCCATTTTTCT
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