FC928864

Overview
NameFC928864
Unique NameFC928864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig375 contig Ccv1_Contig375:70..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIY (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIN (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIM (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIL (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIK (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_SULIA (50S ribosomal protein L32e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = -1
Query:  253 RPQSDR--KISVKENWRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTNK 564
            R  SD+  ++  +E WRRP G D++ R K  G   + ++GY   K+ R + P+G ++ +VHNVN+L  +     +  V IA +V  KKR EI+ +A +L + V+N+
Sbjct:   29 RYDSDKFFRLGRQEKWRRPYGRDNKTRLKVRGFPAIVSVGYRLPKEVRGFHPSGLRQVIVHNVNDLVKVQNQKDSVIVTIASSVGFKKRLEILNKARELGLKVSNE 134          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_MAIZE (60S ribosomal protein L32 (Fragment) OS=Zea mays GN=RPL32 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -1
Query:  223 TYCVEIAHNVSTKKRKEIVERAAQLDVVVTNKLARLRSQEEE 348
            TYC EIAHNVSTKKRKEIVERAAQLD+VV  KLAR  SQE+E
Sbjct:    1 TYCAEIAHNVSTKKRKEIVERAAQLDIVVPTKLARAPSQEDE 42          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_THESM (50S ribosomal protein L32e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 36/90 (40.00%), Postives = 54/90 (60.00%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WR+PKG DS++R K  G    P+IG+   K  R   P+G+++ +V+NV +LEL+   ++     IA  V  KKR  I+ERA +L + V N
Sbjct:   38 WRKPKGTDSKMRVKLKGKARSPSIGWSSPKAVRGLHPSGYEEVLVYNVKDLELI--DSKRQAARIAATVGKKKRIMIIERARELGIKVLN 125          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_THEGJ (50S ribosomal protein L32e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   +  R   P+G+++ +VHNV ELE +          IA  V  +KR+ I+ RA +L + V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPRAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIARTVGARKREAIIARAKELGIKVLN 125          
BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_THEON (50S ribosomal protein L32e OS=Thermococcus onnurineus (strain NA1) GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = -1
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   +  R   P+G+++ +VHNV ELE +          IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKARSPSIGWSSPRLVRGLHPSGYEEVLVHNVKELEAI--DPARQAARIARTVGARKREMILARAKELGVKVLN 125          
The following BLAST results are available for this feature:
BLAST of FC928864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_SULIY2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIN2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIM2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIL2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIK2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_SULIA2.131e-1235.8550S ribosomal protein L32e OS=Sulfolobus islandicu... [more]
RL32_MAIZE4.748e-1283.3360S ribosomal protein L32 (Fragment) OS=Zea mays G... [more]
RL32_THESM2.356e-1140.0050S ribosomal protein L32e OS=Thermococcus sibiric... [more]
RL32_THEGJ4.019e-1140.0050S ribosomal protein L32e OS=Thermococcus gammato... [more]
RL32_THEON5.250e-1141.1150S ribosomal protein L32e OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CB07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928864 ID=FC928864; Name=FC928864; organism=Citrus clementina; type=EST; length=627bp
ATATGCATAATTAATAAAAGGTTTGGCCATAAACCTTAACTCCTAAGTTG
ACATAACATTAATCATGCTCCACAAAAGACAACAAATTCAAAATATCATT
CAGGTGACAAATAAAAAATACATCATAATTCAACCCTGGAAATGTTCATC
CATTCCAAAGACAACCTAGGAAACATTTGGCCAAAAGCAAACACTAACAC
AAAATATAAAAACCAATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCC
AATTTGTTGGTGACCACAACATCCAATTGTGCAGCACGCTCGACAATCTC
CTTTCTCTTCTTGGTTGATACATTGTGGGCTATCTCAACACAATAAGTCC
TGTTGTGCATCATCAAGAGTTCCAGTTCATTGACATTGTGCACAACAAAC
TTCTTGAATCCATTGGGCAGATAGTGGCGTGTTTTCTTGTCCCAACCGTA
GCCAATATTGGGCATCAAAACACATCCATTGAACTTTCTCCTGACACGTG
AATCAATACCCTTCGGCCTTCGCCAATTTTCCTTCACTGATATCTTCCTG
TCACTCTGGGGCCTCTTGAACTTCTTGAGACGCTTCTTCACTATCTTCTT
GGTCAGCAAAGGAACACCCATTTTTCT
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