FC928864

Overview
NameFC928864
Unique NameFC928864
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC928864 vs. ExPASy Swiss-Prot
Match: RL32_PYRKO (50S ribosomal protein L32e OS=Pyrococcus kodakaraensis GN=rpl32e PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = -1 
Query:  256 WRRPKGIDSRVRRKFNGCVLMPNIGYGWDKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCVEIAHNVSTKKRKEIVERAAQLDVVVTN 525
            WRRPKGIDS++R K  G    P+IG+   K  R   P+G+++ +VHNV ELE +          IA  V  +KR+ I+ RA +L V V N
Sbjct:   38 WRRPKGIDSKMRLKKKGKPRSPSIGWSSPKAVRGLHPSGYEEVLVHNVKELEAI--DPTRQAARIAGTVGARKREMILARAKELGVKVLN 125
The following BLAST results are available for this feature:
BLAST of FC928864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RL32_PYRKO5.250e-1142.2250S ribosomal protein L32e OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CB07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928864 ID=FC928864; Name=FC928864; organism=Citrus clementina; type=EST; length=627bp
ATATGCATAATTAATAAAAGGTTTGGCCATAAACCTTAACTCCTAAGTTG
ACATAACATTAATCATGCTCCACAAAAGACAACAAATTCAAAATATCATT
CAGGTGACAAATAAAAAATACATCATAATTCAACCCTGGAAATGTTCATC
CATTCCAAAGACAACCTAGGAAACATTTGGCCAAAAGCAAACACTAACAC
AAAATATAAAAACCAATTTTTACTCCTCCTCCTGGCTGCGCAACCTGGCC
AATTTGTTGGTGACCACAACATCCAATTGTGCAGCACGCTCGACAATCTC
CTTTCTCTTCTTGGTTGATACATTGTGGGCTATCTCAACACAATAAGTCC
TGTTGTGCATCATCAAGAGTTCCAGTTCATTGACATTGTGCACAACAAAC
TTCTTGAATCCATTGGGCAGATAGTGGCGTGTTTTCTTGTCCCAACCGTA
GCCAATATTGGGCATCAAAACACATCCATTGAACTTTCTCCTGACACGTG
AATCAATACCCTTCGGCCTTCGCCAATTTTCCTTCACTGATATCTTCCTG
TCACTCTGGGGCCTCTTGAACTTCTTGAGACGCTTCTTCACTATCTTCTT
GGTCAGCAAAGGAACACCCATTTTTCT
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