FC928880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP270_ARATH (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12 Identity = 45/162 (27.78%), Postives = 77/162 (47.53%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERN-VIPDASTLSIVVDLLVK 489 R G+ + AY T + G C +G IV+A+ +F + + C +IR+Y LI+G K G L A +++ + +VV Y M+ ALC K +A L M + AP FN + G ++ +M++++ P+ T + ++D L K Sbjct: 344 RGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK 505 HSP 2 Score: 69.3218 bits (168), Expect = 2.957e-11 Identity = 46/167 (27.54%), Postives = 82/167 (49.10%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKG---VAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNEI 498 ++H + Y +DGL K I EA L R + + E +Y+ L+ G C +G IA +L + D +T N++I A C GK ++A + LD+ + G PD +++ ++ G R+N V LL RM ++P +T S++++ + ++I Sbjct: 485 QQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAERAAQM-LDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSVLINCFILDDI 650
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP139_ARATH (Pentatricopeptide repeat-containing protein At2g01390 OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12 Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 1 Query: 7 RRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVI 444 + GV DT Y + I + +G + A+ L+ +R CE + SY+ + L GR++ A E++ + R + + TY +++ L A GK ++A D+F M+ GV PD A N L+ ++ ETS + +L M E V+ Sbjct: 149 KEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGETSFMTRVLVYMKENGVV 294
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19895 OS=Arabidopsis thaliana GN=At4g19895 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12 Identity = 42/160 (26.25%), Postives = 82/160 (51.25%), Query Frame = 1 Query: 1 GTRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDM-EAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477 G + G D + LC+NG + A+ FR + L + ++ +++ LIDGLCK G +K A+E+ + R +V T+ +I LC G +KA LFL + + P+ + +++ G + ++ ++ L RM E+ + P+ +T + +++ Sbjct: 242 GMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP239_ARATH (Putative pentatricopeptide repeat-containing protein At3g16890, mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12 Identity = 40/156 (25.64%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLL 483 G++ + + TF+ G G + + + L + + D+ ++S +I+ LC++ +K A++ F + + + +TYNI+I + C+ G D++ LF M+ G++PD A+N + + + K ELL M + PD T S ++ L Sbjct: 455 GISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKAL 610
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP291_ARATH (Pentatricopeptide repeat-containing protein At3g61360 OS=Arabidopsis thaliana GN=At3g61360 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12 Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNE--TSKVVELLHRMDERNVIPDASTLSIVVDLLVKN-EISL 504 + G ++ Y IDG CK EAL LF + L ++ ++ + LI G + A +LF + + L D YN ++ +L G + A + +ME KG+ PD V F+++ +G +++ E + V E +M ER+++P T+ +++ L N E++L Sbjct: 238 KRGFKPNSVTYGIRIDGFCKKRNFGEALRLFEDMDRLDFDITVQILTTLIHGSGVARNKIKARQLFDEISKRGLTPDCGAYNALMSSLMKCGDVSGAIKVMKEMEEKGIEPDSVTFHSMFIGMMKSKEFGFNGVCEYYQKMKERSLVPKTPTIVMLMKLFCHNGEVNL 405
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12 Identity = 49/158 (31.01%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 70 NGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIA-DVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVKNE---ISLNSIPQFKSQ 531 +G A +LF + L CE ++S++ L+ S +L A + F LP + I D+VTYN MI ALC G MD +F ++E G PD ++FNTL+ R + + M +N+ P+ + + V L +N+ +LN I K++ Sbjct: 135 SGMAEHAHKLFDEMPELNCERTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTDALNLIDVMKTE 292
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12 Identity = 43/160 (26.88%), Postives = 74/160 (46.25%), Query Frame = 1 Query: 10 RHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 R G + D++ Y + L K + AL ++ + + + Y+ LIDGL ++G L+ + + DVV Y +MI G++DKA ++F +M KG P+ +N+++ G E + LL M+ R P+ S +V L K Sbjct: 282 RDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAGEFREACWLLKEMESRGCNPNFVVYSTLVSYLRK 441
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PPR79_ARATH (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12 Identity = 40/151 (26.49%), Postives = 75/151 (49.67%), Query Frame = 1 Query: 40 YRTFIDGLCKNGYIVEALELFRT-LRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVDLLVK 489 + T I GLCK+ + EAL++ L++ + Y+ LI LC+ G L A++L G + D Y+ +I +L G+ ++ + +M KG PD V +N L+ G N++ +L M E+ + PD + ++++ + + Sbjct: 190 FGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFR 340 HSP 2 Score: 67.781 bits (164), Expect = 8.604e-11 Identity = 42/155 (27.10%), Postives = 69/155 (44.52%), Query Frame = 1 Query: 13 HGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDASTLSIVVD 477 +GV Y + I LC+ G + A +L K ++D YS LI L K+GR + + D VTYN++I+ C + + A+ + +M KG+ PD +++N ++ R + + L M R PD + IV D Sbjct: 217 YGVRPTVHIYASLIKALCQIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDMPRRGCSPDTLSYRIVFD 371
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP233_ARATH (Putative pentatricopeptide repeat-containing protein At3g15200 OS=Arabidopsis thaliana GN=At3g15200 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12 Identity = 51/184 (27.72%), Postives = 88/184 (47.83%), Query Frame = 1 Query: 4 TRRHGVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDER--NVIPDASTLS-------------IVVDLLVKNEISLNS 510 +RR D A ++G C G + EA ++ + KC D+ SY +I+ L K G+L A EL+ ++ DV N +I ALC ++ +A ++F ++ KG P+ V +N+L+ + T KV EL+ M+ + + P+ T S IV++ + KN+ + S Sbjct: 238 SRRREFGCDIKAMNMILNGWCVLGNVHEAKRFWKDIIASKCRPDVVSYGTMINALTKKGKLGKAMELYRAMWDTRRNPDVKICNNVIDALCFKKRIPEALEVFREISEKGPDPNVVTYNSLLKHLCKIRRTEKVWELVEEMELKGGSCSPNDVTFSYLLKYSQRSKDVDIVLERMAKNKCEMTS 421
BLAST of FC928880 vs. ExPASy Swiss-Prot
Match: PP160_ARATH (Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.562e-12 Identity = 39/146 (26.71%), Postives = 70/146 (47.95%), Query Frame = 1 Query: 16 GVAADTWAYRTFIDGLCKNGYIVEALELFRTLRILKCELDIRSYSCLIDGLCKSGRLKIAWELFHSLPRGVLIADVVTYNIMIHALCADGKMDKAHDLFLDMEAKGVAPDCVAFNTLMLGCIRNNETSKVVELLHRMDERNVIPDA 453 G D ++ LC G + EALE+ + ++D+ + + L+ G C G++++A F + R + +V TYN++I C G +D A D F DM+ + + FNTL+ G T +++L M + + + A Sbjct: 278 GFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGGRTDDGLKILEMMQDSDTVHGA 423 The following BLAST results are available for this feature:
BLAST of FC928880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 137
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Sequences
The
following sequences are available for this feature:
EST sequence >FC928880 ID=FC928880; Name=FC928880; organism=Citrus clementina; type=EST; length=829bpback to top |