FC928884

Overview
NameFC928884
Unique NameFC928884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig386 contig Ccv1_Contig386:23..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.445e-20
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 2
Query:  101 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 328
            Y + EV+  N  K+ WL+I G+VYDVT+FL++HPGG+EVLL   G DA++ FEDVGHSS A+ M+ ++Y+GDI  S
Sbjct:   23 YRMEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPS 98          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 38/79 (48.10%), Postives = 60/79 (75.95%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 331
            K+++L EVS H  + D W++I  KVYD+T+F+ +HPGG+EVL+   GKDAT+ FED+GHS  A+ M++E+ +G +D ++
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 2
Query:   77 QMGGE---GKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            + GGE   G+ Y L EV  HN+ +  W+I+  ++YD+TKFLD+HPGG+EVL    G DAT++FEDVGHS+ A+A+ + F +G++
Sbjct:    6 EAGGEAWRGRYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGHSTDARALSETFIIGEL 89          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.213e-19
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 2
Query:  101 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 328
            Y L EV+  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+  S
Sbjct:   23 YRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPS 98          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.703e-19
Identity = 38/73 (52.05%), Postives = 55/73 (75.34%), Query Frame = 2
Query:  101 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            Y L EV+  N  ++ W++I G+VYD+T+FL +HPGG+EVLL   G DAT+ FEDVGHS  A+ M+ ++Y+GD+
Sbjct:   23 YRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDV 95          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K YTL E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ M   F +G++
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGEL 84          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.022e-19
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K YTL E+  HN  K  WLI+  KVYD+TKFL+DHPGG+EVL    G DAT++FED+GHS+ A+ +   F +G++
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGEL 84          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K YTL E+  HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   10 KYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.865e-19
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K YTL E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT+DFEDVGHS+ A+ +   + +G++
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGHSTDARELSKTYIIGEL 80          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.027e-18
Identity = 40/75 (53.33%), Postives = 55/75 (73.33%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K YTL E+  HN+ K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   10 KYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
The following BLAST results are available for this feature:
BLAST of FC928884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CYB5B_PONAB2.445e-2055.26Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5_RHIST9.291e-2048.10Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_CHICK1.213e-1948.81Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
CYB5B_MOUSE1.213e-1951.32Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_RAT2.703e-1952.05Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_HUMAN6.022e-1954.67Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_HORSE6.022e-1953.33Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_PIG7.865e-1953.33Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]
CYB5_ALOSE7.865e-1953.33Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_BOVIN1.027e-1853.33Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CD04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928884 ID=FC928884; Name=FC928884; organism=Citrus clementina; type=EST; length=678bp
AAATCCGCTCCTCCTGGTGCTCACCTACTGGGCATAAAAGTTTCACGTTT
TTCCCTGAAAAATCTGACCTTTTTTACAAATGGGCGGAGAGGGCAAGGTA
TACACTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCT
TATCATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATC
CTGGTGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGAT
GACTTTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGA
ATTCTATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAGT
ACACCCCTCCCAAGCAGCCTCACTACAACCAAGACAAGACACCCGAGTTT
ATTATAAAGCTCCTCCAGTTCCTAGTTCCTCTGCTAATCTTAGGATTGGC
TGTTGGCATCCGCTTCTATACCAAATCCGCTTAATGATACCTTGCAAGAT
AAAAATACATTTACAATAAATCTATATCCGTTGCATTGCACCTTGTTTTT
ACTAGTTGTTTGGAACTATTATCACCAGAAAATGTAGGGTTCTTTATCTT
TTGTGATGGCATGTGCTTGTGTTTGATAAGTGACCATTCACTGCCCGCAT
GACTTGGAATGCAATGATCAATTTGCAG
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