FC928884

Overview
NameFC928884
Unique NameFC928884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig386 contig Ccv1_Contig386:23..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  535 MNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   95 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            K +T+AEV  H   +  W +++GKVYD T FL DHPGG + +L   G DATD+F  + HS  AK  + E+Y+G++
Sbjct:  217 KSFTMAEVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAI-HSLKAKKQLLEYYIGEL 290          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.466e-14
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  535 MNTSAKMYSMSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.833e-14
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  HN     W+I+ G VYD T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++
Sbjct:  531 MNTASKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 609          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA_SPIOL (Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 328
            M    K+Y+++EV  HN     W+++ G VY+ T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++ S+
Sbjct:  547 MNTTSKMYSMSEVKKHNTADSAWIVVHGNVYNATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKRLLEDFRIGELIST 628          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  H+     W+I+ G +YD T+FL DHPGG + +L   G D T++F+ + HS  AK +++EF +G++
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 31/77 (40.26%), Postives = 52/77 (67.53%), Query Frame = 2
Query:   89 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            +GK +T++EV  H+ +   W+++ G VYD T FL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  540 DGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.949e-14
Identity = 31/80 (38.75%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  HN     W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  541 MNTASKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+++++EV  HN  +  W+I+ G +YD T FL DHPGG + +L   G D T++F+ + HS  AK M++++ +G++
Sbjct:  524 MNTSSKMFSMSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 602          
BLAST of FC928884 vs. ExPASy Swiss-Prot
Match: NIA2_TOBAC (Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:   80 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 319
            M    K+Y+++EV  H+     W+I+ G +YD T+FL DHPGG + +L   G D T++F+ + HS  AK ++++F +G++
Sbjct:  527 MNTASKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGEL 605          
The following BLAST results are available for this feature:
BLAST of FC928884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
NIA1_BRANA3.420e-1438.75Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_CHLVU4.466e-1445.33Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]
NIA2_BRANA4.466e-1438.75Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA_PETHY5.833e-1440.00Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA_SPIOL7.618e-1437.35Nitrate reductase [NADH] OS=Spinacia oleracea GN=N... [more]
NIA1_TOBAC7.618e-1438.75Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA1_ORYSJ9.949e-1440.26Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA1_ARATH9.949e-1438.75Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA_BETVE2.216e-1337.50Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NIA2_TOBAC2.216e-1337.50Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1CD04RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1CD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928884 ID=FC928884; Name=FC928884; organism=Citrus clementina; type=EST; length=678bp
AAATCCGCTCCTCCTGGTGCTCACCTACTGGGCATAAAAGTTTCACGTTT
TTCCCTGAAAAATCTGACCTTTTTTACAAATGGGCGGAGAGGGCAAGGTA
TACACTTTGGCTGAGGTCTCTGGGCACAACGACCGCAAGGACTGTTGGCT
TATCATTGAGGGCAAGGTATATGATGTGACAAAATTCTTGGATGACCATC
CTGGTGGAGACGAGGTATTGTTGTCTGCCACAGGAAAGGATGCGACTGAT
GACTTTGAGGATGTTGGTCACAGTAGCAGTGCAAAAGCGATGATGGATGA
ATTCTATGTGGGTGACATTGATTCATCAACCGTTCCCACCAAGACCAAGT
ACACCCCTCCCAAGCAGCCTCACTACAACCAAGACAAGACACCCGAGTTT
ATTATAAAGCTCCTCCAGTTCCTAGTTCCTCTGCTAATCTTAGGATTGGC
TGTTGGCATCCGCTTCTATACCAAATCCGCTTAATGATACCTTGCAAGAT
AAAAATACATTTACAATAAATCTATATCCGTTGCATTGCACCTTGTTTTT
ACTAGTTGTTTGGAACTATTATCACCAGAAAATGTAGGGTTCTTTATCTT
TTGTGATGGCATGTGCTTGTGTTTGATAAGTGACCATTCACTGCCCGCAT
GACTTGGAATGCAATGATCAATTTGCAG
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