FC928893

Overview
NameFC928893
Unique NameFC928893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length778
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 8.543e-87
Identity = 149/185 (80.54%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE K+MYSLI++YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEK  ADPSYWDKIS GGLKRI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEMFYALKYR LA +VPLAV+
Sbjct:  617 QAEFKRMYSLIEEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKSTADPSYWDKISQGGLKRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMFYALKYRSLAAAVPLAVD 801
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS1_MAIZE (Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.116e-86
Identity = 146/185 (78.92%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE KKMYSLID+YKL G  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTV+E+MTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FF+KCKADPSYWD+IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA  VPL+ +
Sbjct:  618 QAEFKKMYSLIDEYKLKGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVIESMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFDKCKADPSYWDEISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASQVPLSFD 802
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 1.903e-86
Identity = 149/185 (80.54%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +A+MKKMY LID YKLNGQFRWIS+Q NRVRNGELYR I DTKGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SG+HIDPYHGE+AAE++V+FFE+CK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDR+E RRYLEMF ALKYR LAESVPLAV+
Sbjct:  617 QAQMKKMYGLIDTYKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKYTWQIYSERLLTLGGVYGFWKHVSKLDRIEIRRYLEMFCALKYRNLAESVPLAVD 801
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.486e-86
Identity = 149/185 (80.54%), Postives = 169/185 (91.35%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE+KKMYSLI++YKL+G  RWIS+QMNRVRNGELYRYI D+KG FVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SGYHIDPYHG++AAE+LVDFFEK K D ++WD IS GGLKRI EKYTWKIYS+RLLTL GVYGFWK+VSNLDR E++RYLEMFYALKYR LA+SVPLAV+
Sbjct:  622 QAELKKMYSLIEEYKLDGHIRWISAQMNRVRNGELYRYIADSKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKYTWKIYSERLLTLAGVYGFWKYVSNLDRRETKRYLEMFYALKYRNLAKSVPLAVD 806
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.486e-86
Identity = 146/185 (78.92%), Postives = 169/185 (91.35%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE+KKMY LI++YKL G  RWIS+QMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SG+HIDPYHG++A+E LV FFEKCK DP++W+KIS GGL+RI EKYTWK+YS+RL+TL GVYGFWK+VSNLDR E+RRYLEMFYALKYR LA+SVPLA++
Sbjct:  620 QAELKKMYKLIEEYKLQGHIRWISAQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGFHIDPYHGDKASEQLVSFFEKCKEDPAHWEKISQGGLQRIYEKYTWKLYSERLMTLAGVYGFWKYVSNLDRRETRRYLEMFYALKYRNLAKSVPLAID 804
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS2_ORYSJ (Sucrose synthase 2 OS=Oryza sativa subsp. japonica GN=SUS2 PE=1 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 7.232e-86
Identity = 146/185 (78.92%), Postives = 165/185 (89.19%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE KKMY LIDQYKL G  RWIS+QMNRVRNGELYRYICDTKG FVQPA YEAFGLTV+EAMTCGLPT ATC GGPAEIIV+G SG HIDPYH ++AA+ILV+FFEKCK D +YWD IS GGL+RI EKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRY+EMFYALKYR LA +VPLAV+
Sbjct:  618 QAEFKKMYGLIDQYKLKGHIRWISAQMNRVRNGELYRYICDTKGVFVQPAFYEAFGLTVIEAMTCGLPTIATCHGGPAEIIVDGVSGLHIDPYHSDKAADILVNFFEKCKQDSTYWDNISQGGLQRIYEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYIEMFYALKYRSLASAVPLAVD 802
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS2_MAIZE (Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 9.446e-86
Identity = 146/185 (78.92%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY G++A+ +LVDFF+KC+A+PS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  626 QAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQGDKASALLVDFFDKCQAEPSHWSKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 3.589e-85
Identity = 145/185 (78.38%), Postives = 167/185 (90.27%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE KKM+ LI+QY LNG  RWIS+QMNRVRNGELYRYICDTKGAFVQPA YEAFGLTVVE+MTCGLPTFAT  GGPAEIIVNG SG+HIDPY G++A+ +LV+FFEKC+ DPS+W KIS GGL+RIEEKYTWK+YS+RL+TLTGVYGFWK+VSNL+R E+RRYLEM YALKYR +A +VPLAVE
Sbjct:  626 QAEFKKMFDLIEQYNLNGHIRWISAQMNRVRNGELYRYICDTKGAFVQPAFYEAFGLTVVESMTCGLPTFATAYGGPAEIIVNGVSGFHIDPYQGDKASALLVEFFEKCQEDPSHWTKISQGGLQRIEEKYTWKLYSERLMTLTGVYGFWKYVSNLERRETRRYLEMLYALKYRTMASTVPLAVE 810
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.155e-83
Identity = 141/185 (76.22%), Postives = 168/185 (90.81%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            +AE KKM++LI+QY LNG  RWIS+QMNRVRNGELYRYICD +GAFVQPALYEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SGYHIDPY  ++A+ +LV+FFEKC+ DP++W KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+V+NLDR E+RRYLEM YALKYRK+A +VPLA+E
Sbjct:  626 QAEFKKMFNLIEQYNLNGHIRWISAQMNRVRNGELYRYICDMRGAFVQPALYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVHGVSGYHIDPYQNDKASALLVEFFEKCQEDPNHWIKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVTNLDRRETRRYLEMLYALKYRKMATTVPLAIE 810
[Close]
BLAST of FC928893 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.277e-82
Identity = 141/185 (76.22%), Postives = 164/185 (88.65%), Query Frame = 3 
Query:    6 EAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 560
            + E KKM+ LI++Y L+G  RWIS+QMNRVRNGELYRYICD KGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIVNG SGYHIDPY  ++A+ +LV FF KC+ DPS+W+KIS GGL+RIEEKYTWK+YS+RL+TL+GVYGFWK+VSNLDR E+RRYLEM YALKYRK+A +VPLAVE
Sbjct:  626 QVEFKKMFDLIEKYNLSGHIRWISAQMNRVRNGELYRYICDMKGAFVQPAFYEAFGLTVIEAMTCGLPTFATAYGGPAEIIVNGVSGYHIDPYQNDKASALLVGFFGKCQEDPSHWNKISQGGLQRIEEKYTWKLYSERLMTLSGVYGFWKYVSNLDRRETRRYLEMLYALKYRKMAATVPLAVE 810
The following BLAST results are available for this feature:
BLAST of FC928893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUS1_HORVU8.543e-8780.54Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUS1_MAIZE1.116e-8678.92Sucrose synthase 1 OS=Zea mays GN=SH-1 PE=2 SV=1[more]
SUS2_DAUCA1.903e-8680.54Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]
SUS2_TULGE2.486e-8680.54Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS1_TULGE2.486e-8678.92Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUS2_ORYSJ7.232e-8678.92Sucrose synthase 2 OS=Oryza sativa subsp. japonica... [more]
SUS2_MAIZE9.446e-8678.92Sucrose synthase 2 OS=Zea mays GN=SUS1 PE=1 SV=1[more]
SUS1_ORYSJ3.589e-8578.38Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS3_ORYSJ1.155e-8376.22Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS2_HORVU1.277e-8276.22Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA03RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928893 ID=FC928893; Name=FC928893; organism=Citrus clementina; type=EST; length=778bp
GGCACGAGGCTGAAATGAAGAAGATGTATTCCCTCATTGATCAATACAAA
TTGAATGGCCAGTTCCGATGGATCTCATCTCAGATGAATCGGGTCAGGAA
CGGTGAATTGTACCGGTACATTTGTGATACAAAGGGAGCTTTTGTGCAAC
CTGCACTGTATGAGGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTGT
GGATTGCCAACATTTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCGT
TAACGGGAAATCTGGCTACCACATTGATCCTTACCATGGTGAGCAGGCTG
CTGAGATCCTTGTTGACTTCTTTGAGAAGTGCAAGGCAGATCCCTCATAC
TGGGACAAGATATCACTGGGTGGCCTGAAGCGTATTGAAGAGAAGTATAC
ATGGAAAATTTACTCTCAGAGGCTTCTGACCCTGACTGGAGTCTATGGGT
TCTGGAAACATGTATCTAACCTTGATCGTCTTGAGAGCCGTCGATACCTT
GAAATGTTTTATGCTCTCAAGTACCGTAAGCTGGCTGAATCTGTTCCTCT
GGCTGTGGAGGAGTAAATGGACATTGAGGGAAGCTCTCAGGGTGGTTGGT
CCGAGTGGAGGTTTCTTGAGTTGTGGAGAATAATGTCGCTTCCGGGATTG
CGATTGGACAAAGACTTTTTTCCCCCCGTTAAATTTTCTTTTTTCCAATT
TTTTTTTTGCCTTTTTGCATTTCTCAGCATTGTTTGTACTTTTGGGTGTT
CCACCCTCATCAATTCCATTATAGTTTG
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