FC928895

Overview
NameFC928895
Unique NameFC928895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:33..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC928895 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.280e-53
Identity = 110/247 (44.53%), Postives = 158/247 (63.97%), Query Frame = 1 
Query:   52 SKSKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSDPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGQTLQRVYVPEEQ 786
            +K++ L +GGTG+IG+FI +AS   G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +   +DIG +T+K +DD RTLNK ++ +P  N YS N+L SLWE+KIG+TL R  V  ++
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADK 256
The following BLAST results are available for this feature:
BLAST of FC928895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN1.280e-5344.53Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA05RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928895 ID=FC928895; Name=FC928895; organism=Citrus clementina; type=EST; length=787bp
AAAAAAGGAAAGAATCCCCGAAATTGAACTGAATAATTCTCGGTAATGGC
GTCGAAAAGCAAGATTCTATTCATCGGCGGTACAGGGTACATCGGCAAAT
TCATCGTCGAAGCGAGCGCGAAAGCCGGCCACCCGACGTTCGTGCTCGTG
AGAGAATCCACACTCTCCGATCCTTCCAAATCTCAGCTCCTCGATCACTT
CAAAAAACTCGGCGTCAATCTCGTCATCGGAGATGTGTTGAATCACGAGA
GCTTGGTGAAGGCGATAAAACAAGTGGACGTGGTGATATCAACGGTCGGT
CACACTTTATTAGGTGATCAGGTCAAGATTATTGCGGCCATTAAAGAAGC
TGGTAACATTAAGAGATTCTTCCCTTCAGAATTTGGGAATGATGTTGATC
GAGTCCATGCCGTTGAGCCAGCAAAATCAGCATTTGCCACAAAGGCAAAA
ATCCGCCGAGCCGTTGAGGCTGAAGGGATTCCGTATACTTATGTAGCGTC
GAATTTCTTTGCTGCTTACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCA
CTGCCCCACCTAGGGATAAAGTTGTCATCTTAGGCGATGGAAATCCAAAA
GCTGTTTATAACAAGGAAGATGATATTGGAACCTATACTATCAAAGCGGT
TGATGATCCCAGAACCTTGAACAAAATCCTTTACATTAAACCCCCTGGTA
ATATTTACTCATTCAATGATCTTGTGTCCTTGTGGGAGAGAAAGATTGGG
CAAACCCTCCAAAGGGTGTACGTTCCGGAGGAGCAAG
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