FC928897

Overview
NameFC928897
Unique NameFC928897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15011 contig Ccv1_Contig15011:1..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.639e-17
Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 291
            ++V GLQ+ KD +WID   + +++++++GDQ+E+++NGKYK+V+HR    KD  RMS   F  P +D V+ P P LV+   +EN   Y    F DY
Sbjct:  190 DKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 8.670e-17
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDD-RWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ 321
            +L  N   GLQVF+DD  W+ A  +P +L++++GD + IL+NG + +VLHR  VN  ++R S      PP+D ++ PLP+LVD    P Y +  +K Y   K     Q
Sbjct:  233 ILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHVRSRFSMAYLWGPPSDIMISPLPKLVDPLQSPLYPSLTWKQYLATKATHFNQ 340          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.523e-16
Identity = 42/100 (42.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKA--KKFKDYSYCKL 306
            ++V GLQ+ KD +WID   + +++++++GDQ+E+++NGKYK+VLHR     D TRMS   F  P +D V+ P P LV+ E   + K    KF    Y KL
Sbjct:  190 DKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAPTLVEKEADQECKQVYPKFVFDDYMKL 289          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.295e-16
Identity = 38/93 (40.86%), Postives = 61/93 (65.59%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 291
            ++V GLQ+ KD++WID   + +++++++GDQ+E+++NGKYK+V+HR     D TRMS   F  P  D V+ P P L+ +E+   Y    F DY
Sbjct:  190 DKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGTRMSLASFYNPGNDAVIYPAPSLI-EESKQVYPKFVFDDY 281          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 38/90 (42.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYK 270
            VL+P  VPGL++     WI  + +PN+L+I+ G Q+E+++NG  KAV HR   N  + R+S   F+ P  D VVGP  + V ++NPP+Y+
Sbjct:  216 VLLPGAVPGLEIAYKGGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYR 305          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.303e-16
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   19 VPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKA--KKFKDYSYCKL 306
            V GLQ+ KD+ WID   + ++++++IGDQ+E+++NGKYK+V+HR     +  RMS   F  P +D V+ P P+LV+ E   K K    KF    Y KL
Sbjct:  190 VSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFYNPGSDAVIFPAPELVEKEAAEKKKETYPKFVFEDYMKL 287          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO_PERAE (1-aminocyclopropane-1-carboxylate oxidase OS=Persea americana GN=ACO PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 39/96 (40.62%), Postives = 59/96 (61.46%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPK---YKAKKFKDY 291
            + V GLQ+ KD  W+D   + ++++I++GDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LV+ E   K   Y    F+DY
Sbjct:  191 DRVAGLQLLKDGEWVDVPPMNHSIVINLGDQVEVITNGKYKSVMHRVVAQTDGNRMSLASFYNPGSDAVIFPAPALVEKEAEEKKEVYPKFVFEDY 286          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO2_MALDO (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Malus domestica GN=ACO2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDD--ENPPKYKAKKFKDY 291
            ++V GLQ+ KD  W+D   + ++++I++GDQIE+++NGKYK+++HR     D TRMS   F  P  D  + P P L+++  E  P Y    F DY
Sbjct:  190 DKVSGLQLLKDGEWMDVPPVHHSIVINLGDQIEVITNGKYKSIMHRVIAQSDGTRMSIASFYNPGDDAFISPAPALLEEKSEVSPTYPKFLFDDY 284          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 38/95 (40.00%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD--DENPPKYKAKKFKDY 291
            ++V GLQ+ KD  W+D   + ++++I++GDQIE+++NGKYK+V+HR     D TRMS   F  P  D+ + P P +++   E+ P Y    F DY
Sbjct:  190 DKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDY 284          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 7.340e-16
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVD---DENPPKYKAKKFKDY 291
            ++V GLQ+ KD++WID   + +++++++GDQ+E+++NGKYK+VLHR     D TRMS   F  P +D V+ P   LV+   +E+   Y    F DY
Sbjct:  190 DKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYNPGSDAVIYPAKTLVEKEAEESTQVYPKFVFDDY 285          
The following BLAST results are available for this feature:
BLAST of FC928897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACCO1_PETHY6.639e-1741.671-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
G3OX2_ARATH8.670e-1738.89Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ACCO3_PETHY2.523e-1642.001-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO4_SOLLC3.295e-1640.861-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
IDS2_HORVU4.303e-1642.22Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
ACCO_DENCR4.303e-1641.841-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO_PERAE5.620e-1640.631-aminocyclopropane-1-carboxylate oxidase OS=Perse... [more]
ACCO2_MALDO5.620e-1640.001-aminocyclopropane-1-carboxylate oxidase 2 OS=Mal... [more]
ACCO1_MALDO5.620e-1640.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO1_SOLLC7.340e-1640.631-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928897 ID=FC928897; Name=FC928897; organism=Citrus clementina; type=EST; length=498bp
GTTCTTGTGCCCAATGAAGTTCCTGGTCTGCAAGTCTTTAAGGACGACCG
TTGGATCGATGCCAAGTACATCCCGAACGCTCTCATCATCCACATCGGGG
ACCAGATCGAGATTCTGAGCAATGGCAAGTACAAAGCCGTGCTGCATAGA
ACCACTGTTAACAAGGACAAGACGAGAATGTCGTGGCCAGTTTTCTTGGA
GCCACCTGCGGATACGGTGGTGGGTCCCCTTCCTCAGCTGGTTGACGATG
AAAATCCTCCAAAGTACAAGGCCAAGAAGTTCAAGGATTACAGTTACTGT
AAACTTAACAAACTTCCTCAGTAGATTTTTCATTATGAGAAAAATAACAC
CAGTATCCGCTGGCCGCTCATGTTTGATCTCGTCACTGTACGTTAGCGAT
GCTTGTTTGTTGTTGCGATCTTGTTTCTGAAATGTAATCGCGGGTGTTAG
CAATAATAAATAATCCTTTCATTTTAAAAAAAAAAAAAAAAAAAAAAA
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