FC928897

Overview
NameFC928897
Unique NameFC928897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15011 contig Ccv1_Contig15011:1..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.611e-13
Identity = 34/93 (36.56%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 291
            ++V GLQ+ KD  WID   + ++++I++GDQ+E+++NG+YK+++HR    K+  RMS   F  P +D  + P   L   E   +Y +  F DY
Sbjct:  193 DKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKEGNRMSIASFYNPGSDAEISPASSLACKET--EYPSFVFDDY 283          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 5.816e-13
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L  + V GL+V+ + RW   +  P AL++++GD    LSN +Y++ LHR  VN    R S   FL P  DTVV P  +LVDD +P  Y
Sbjct:  242 ILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTVVRPPEELVDDHHPRVY 330          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.596e-13
Identity = 39/115 (33.91%), Postives = 65/115 (56.52%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKN 345
            +L  ++V GLQVF D++W      P+A +++IGD    L+NG+YK+ LHR  VN ++ R ++  FL P  + VV P  +LV   N  K   +K+ D+++    +  Q  +  + N
Sbjct:  254 ILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELV---NGVKSGERKYPDFTWSMFLEFTQKHYRADMN 365          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX2_ARATH (Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana GN=20ox2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 297
            +L  + V GLQVF D++W   +  P A +++IGD    LSNG +K+ LHR  VN++  R S   FL P  D VV P   +++     K K +K+ D+++
Sbjct:  253 ILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILE-----KMKTRKYPDFTW 346          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L+ ++V GL+V  D  W     +P A++I+IGD    LSNG+YK+ LHR  VN+ + R S   FL P  D VV P P     ++ P +
Sbjct:  257 ILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L+ ++V GL+V  D  W     +P A++I+IGD    LSNG+YK+ LHR  VN+ + R S   FL P  D VV P P     ++ P +
Sbjct:  257 ILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.923e-12
Identity = 31/101 (30.69%), Postives = 57/101 (56.44%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEP---PADTVVGPLPQLVDDENPPKYKAKKFKDYS 294
            +L+ + + GLQV  D  W+D   +P AL++++GD +++++N K+ +V HR   N    R+S   F          V GP+ +++ +ENPP Y+     +Y+
Sbjct:  246 ILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYA 346          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.430e-12
Identity = 34/90 (37.78%), Postives = 48/90 (53.33%), Query Frame = 1
Query:   13 NEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKF 282
            ++V GLQ+ KD RWID + + +A++I+ GDQIE+LSNG+YK+  HR        R S   F  P     + P      +E  P     KF
Sbjct:  190 DQVGGLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAPPALYPKF 279          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  232 ILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  232 ILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAY 320          
The following BLAST results are available for this feature:
BLAST of FC928897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
ACCO1_BRAJU2.611e-1336.561-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
GAOX1_ORYSJ5.816e-1341.57Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
GAOX3_ARATH7.596e-1333.91Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
GAOX2_ARATH1.692e-1237.37Gibberellin 20 oxidase 2 OS=Arabidopsis thaliana G... [more]
GAOX2_ORYSJ2.210e-1239.33Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.210e-1239.33Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH1_ARATH4.923e-1230.691-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO_MUSAC6.430e-1237.781-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
GAO1B_WHEAT8.398e-1242.70Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT8.398e-1242.70Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928897 ID=FC928897; Name=FC928897; organism=Citrus clementina; type=EST; length=498bp
GTTCTTGTGCCCAATGAAGTTCCTGGTCTGCAAGTCTTTAAGGACGACCG
TTGGATCGATGCCAAGTACATCCCGAACGCTCTCATCATCCACATCGGGG
ACCAGATCGAGATTCTGAGCAATGGCAAGTACAAAGCCGTGCTGCATAGA
ACCACTGTTAACAAGGACAAGACGAGAATGTCGTGGCCAGTTTTCTTGGA
GCCACCTGCGGATACGGTGGTGGGTCCCCTTCCTCAGCTGGTTGACGATG
AAAATCCTCCAAAGTACAAGGCCAAGAAGTTCAAGGATTACAGTTACTGT
AAACTTAACAAACTTCCTCAGTAGATTTTTCATTATGAGAAAAATAACAC
CAGTATCCGCTGGCCGCTCATGTTTGATCTCGTCACTGTACGTTAGCGAT
GCTTGTTTGTTGTTGCGATCTTGTTTCTGAAATGTAATCGCGGGTGTTAG
CAATAATAAATAATCCTTTCATTTTAAAAAAAAAAAAAAAAAAAAAAA
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