FC928897

Overview
NameFC928897
Unique NameFC928897
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15011 contig Ccv1_Contig15011:1..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.097e-11
Identity = 38/89 (42.70%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L  + V GLQV  + RW   +   +A +++IGD    LSNG+YK+ LHR  VN    R S   FL P  D VV P   LVD  NP  Y
Sbjct:  232 ILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAY 320          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.443e-11
Identity = 35/89 (39.33%), Postives = 50/89 (56.18%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 267
            +L  + V GLQVF +++W   +  P A +++IGD    LSN +YK+ LHR  VN +  R S   FL P  D VV P  +L+D     +Y
Sbjct:  255 ILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDSITSRRY 343          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.109e-11
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 VLVPNEVPGLQVF----KDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCK 303
            +L    +PGL++     +  RWI  + I  +L++ +GD   I+SNG++++ +HR  VNK   R+S   F  PP +  +GPL    D  +PP Y+   +++Y   K
Sbjct:  234 ILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKTHHRVSAAYFAGPPKNLQIGPLTS--DKNHPPIYRRLIWEEYLAAK 336          
BLAST of FC928897 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VLVPNEVPGLQVFKDDRWIDAKYIPNALIIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVV 222
            +L  ++V GLQ+ KD+RWI  K  P ALII+IGD  +  SNG YK+V HR   N    R S   F+ P  D V+
Sbjct:  223 ILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFMCPSYDAVI 296          
The following BLAST results are available for this feature:
BLAST of FC928897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
GAO1D_WHEAT1.097e-1142.70Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
GAOX1_ARATH2.443e-1139.33Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
G3OX3_ARATH7.109e-1132.38Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX8_ARATH9.285e-1145.95Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA07RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928897 ID=FC928897; Name=FC928897; organism=Citrus clementina; type=EST; length=498bp
GTTCTTGTGCCCAATGAAGTTCCTGGTCTGCAAGTCTTTAAGGACGACCG
TTGGATCGATGCCAAGTACATCCCGAACGCTCTCATCATCCACATCGGGG
ACCAGATCGAGATTCTGAGCAATGGCAAGTACAAAGCCGTGCTGCATAGA
ACCACTGTTAACAAGGACAAGACGAGAATGTCGTGGCCAGTTTTCTTGGA
GCCACCTGCGGATACGGTGGTGGGTCCCCTTCCTCAGCTGGTTGACGATG
AAAATCCTCCAAAGTACAAGGCCAAGAAGTTCAAGGATTACAGTTACTGT
AAACTTAACAAACTTCCTCAGTAGATTTTTCATTATGAGAAAAATAACAC
CAGTATCCGCTGGCCGCTCATGTTTGATCTCGTCACTGTACGTTAGCGAT
GCTTGTTTGTTGTTGCGATCTTGTTTCTGAAATGTAATCGCGGGTGTTAG
CAATAATAAATAATCCTTTCATTTTAAAAAAAAAAAAAAAAAAAAAAA
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