FC928901

Overview
NameFC928901
Unique NameFC928901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 88/269 (32.71%), Postives = 141/269 (52.42%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            + K H+NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV  GR+E G +K G  V
Sbjct:    8 RTKPHVNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 1
Query:   22 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 1
Query:   22 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 93/266 (34.96%), Postives = 137/266 (51.50%), Query Frame = 1
Query:   22 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            +  + K H+NI  IGHVD GK+T +         I K + ++   +A +           +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV  GR+E G +K G
Sbjct:    5 VYDRSKPHVNIGTIGHVDHGKTTLSA-------AISKVLSDKGYSKATDFAS--------IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_DESVM (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 96/269 (35.69%), Postives = 134/269 (49.81%), Query Frame = 1
Query:   25 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            MGKEK      H+NI  IGH+D GK+T T   I K+ G+                   F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  + +P +  S  +     +   + D      LLDA D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTA-AITKVAGL--------------RGNGKFVAFDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGGILVVAATDGPMP-------QTREHILLARQVGVPYLVVFLNKCDMVD---DEELLELVELEVRELLSLYGFPGDDIPVIRGSALKALE-TDDPNSADAAPVVALLDACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG 243          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBM (Elongation factor Tu OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 94/264 (35.61%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBL (Elongation factor Tu OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 94/264 (35.61%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 94/264 (35.61%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 94/264 (35.61%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 94/264 (35.61%), Postives = 138/264 (52.27%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L           +K  A   K        +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV  GRVE GVL  G
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA----------QKGGASATKYD-----EIDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
The following BLAST results are available for this feature:
BLAST of FC928901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICB87.035e-3232.71Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_LACLS7.035e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM7.035e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA7.035e-3234.96Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_DESVM7.035e-3235.69Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_CLOBM7.035e-3235.61Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBL7.035e-3235.61Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBK7.035e-3235.61Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH7.035e-3235.61Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB17.035e-3235.61Elongation factor Tu OS=Clostridium botulinum (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3BA11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928901 ID=FC928901; Name=FC928901; organism=Citrus clementina; type=EST; length=854bp
AAGGTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAA
CATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGAC
ACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTC
GAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGT
GCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTG
CCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCT
CCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGC
TGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTG
GTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACC
CTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCAC
CCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTT
CCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCC
ATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGA
CTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGC
CGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTAC
AAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGT
back to top