FC928901

Overview
NameFC928901
Unique NameFC928901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_EIMTE (Elongation factor Tu, apicoplast OS=Eimeria tenella GN=tufA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 92/262 (35.11%), Postives = 133/262 (50.76%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS-TNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 807
            K KTH+NI  IGHVD GK+T T  +   L  I+    + + +               +D    E+ RGITI+ +  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK+D           + +  EV   L    YN +    +  S  +    IE++  N  W K    L++ALD +I EPKR  +KP  L ++D++ I G GTV  G++E G +K
Sbjct:    8 KTKTHLNIGTIGHVDHGKTTLTAAITSYLSKINNTKAKSYSE---------------IDSAPEEKARGITINTSHIEYETNLRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLAKQVGVPNIIVFLNKIDMVE---DNELLELVELEVRELLDIYEYNGDSTSIIKGSALKALEYIEKNDLNNKWVKNLKNLIEALDKSIPEPKRDINKPFLLSIEDIFSITGRGTVVTGKIERGKVK 244          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_DESVV (Elongation factor Tu OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 99/270 (36.67%), Postives = 135/270 (50.00%), Query Frame = 1
Query:   25 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  + VP V  S  +   +     N D  K    LL A D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVELEVRELLTSYGFPGDDVPVVRGSALKA--LESDDPNSDACKPIRELLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVG 243          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_DESVH (Elongation factor Tu OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 99/270 (36.67%), Postives = 135/270 (50.00%), Query Frame = 1
Query:   25 MGKEK-----THINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            MGKEK      H+NI  IGH+D GK+T T  +                K A  + +  F     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L   G+  + VP V  S  +   +     N D  K    LL A D+ I EP+R  DKP  +P++DV+ I G GTV  GRVE GV+K G
Sbjct:    1 MGKEKFERKKPHVNIGTIGHIDHGKTTLTAAIT---------------KTAGLLGQGKFIAYDEIDKAPEEKERGITIATAHVEYETATRHYAHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGPMP-------QTREHILLARQVGVPYIVVFLNKCDMVD---DEELLELVELEVRELLTSYGFPGDDVPVVRGSALKA--LESDDPNSDACKPIRELLAACDSYIPEPQRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVIKVG 243          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 93/262 (35.50%), Postives = 133/262 (50.76%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L              A E   ++F Y  + DK   E+ERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D           D +  EV   L + G+  +  P V  S  +     + +  +   K   L+  +D  I  P+RP+DK   +P++DV+ I G GTV  GRVETG LK G
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITTIL--------------AKEGKAKAFNYEEI-DKAPEEKERGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEYIVVFLNKADQVD---DPELIDLVEMEVRELLNEYGFPGDDTPIVVGSALKALQNPDDAEAIKPIK--DLMAEVDAYIPTPERPTDKAFLMPIEDVFTITGRGTVATGRVETGTLKVG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_BORGA (Elongation factor Tu OS=Borrelia garinii GN=tuf PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 89/268 (33.21%), Postives = 141/268 (52.61%), Query Frame = 1
Query:   22 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E   +    K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 92/265 (34.72%), Postives = 132/265 (49.81%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+N+  IGHVD GK+T T  +                K  A+     F     +DK   ERERGITI  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +   ++P V    +   EGD        L       L++A+D  I  P+R +DKP  +P++DV+ I G GTV  GRVE G++K G
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGD-----KGELGEQAIFKLMEAVDAYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 93/263 (35.36%), Postives = 132/263 (50.19%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+N+  IGH+D GK+T T  +   L            K   ++  RSF     +D    ERERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK DA          D +  EV   L K G+  + +P V      G  +   +    W  K   L++A+D NI  P R  DKP  +P++D++ I G GTV  GR+E G +K G
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAITKVLS-----------KHNPKIAFRSFDS---IDNAPEERERGITIATAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYVVVFLNKCDAVE---DAELIDLVEMEVRELLNKYGFPGDDLPVV-----RGSALGALNGEAQWEAKIDELMEAVDKNIPLPARDIDKPFLMPIEDIFSISGRGTVVTGRIERGKVKVG 241          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 96/280 (34.29%), Postives = 143/280 (51.07%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFE--KEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE 852
            + K H+NI  IGH+D GK+T T         I K + + +    EA+  ++        +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD         +W  G ++LD +    +NI +P+R  DKP  +P++DV+ I G GTV  GR+E GVLK    V     G+ TE
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITKVLHDAYPDLNEASAFDQ--------IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEYEFPGDDLPVVKVSALKALEGDK--------EW--GQSVLDLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLKVNETVDI--VGIKTE 253          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: CYSN_PHOPR (Sulfate adenylyltransferase subunit 1 OS=Photobacterium profundum GN=cysN PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 87/270 (32.22%), Postives = 137/270 (50.74%), Query Frame = 1
Query:   37 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK--YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 840
            K+ +  +  G VD GKST  G L++    I +  +     ++ ++     K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D AV++ID+  G  +       QTR H+ +A  LG++  I   NKMD     + + R+  I  E   + +K+  N E +  VP+S  +GDN++  S    WYKG +LL  L++++  +       R P+Q V +         G + +G++K G  V   PSG
Sbjct:   24 KSLLRFLTCGSVDDGKSTLIGRLLHDSHQIYEDQLAAIYTDSQKVGTTGDKPDLALLVDGLQAEREQGITIDVAYRYFSTKKRKFIIADTPGHEQYTRNMATGASTCDVAVILIDARKGVLD-------QTRRHSYIASLLGIRHFIVAINKMDLV--GFDEERFTSIRDEYLEFAEKLNKNIE-IKLVPLSALDGDNVVSLSEQTPWYKGDSLLTLLEDVDFVQEQESSDFRFPVQYVNRPNLDFRGFAGTIASGLVKVGDKVKALPSG 283          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_RECAM (Elongation factor Tu, mitochondrial OS=Reclinomonas americana GN=TUFA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.200e-31
Identity = 91/278 (32.73%), Postives = 138/278 (49.64%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTE 852
            + K H NI  IGHVD GK+T T  +   L      V   +++               +DK   E++RGITI  +  ++ETTK +   ID PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK+D           D +  EV   L    Y  +++P +    +   +G+   ++S          L++A+DN I +P+R  D+P  +P++DV+ I G GTV  GRVE G +K G  V     G T +
Sbjct:    8 RTKPHCNIGTIGHVDHGKTTLTAAITKVLSETGGAVFTDYDQ---------------IDKAPEEKKRGITISTSHVEYETTKRHYAHIDCPGHEDYVKNMITGAAQMDGAILVVSAVDGPMP-------QTREHILLSRQVGVPSLVVFLNKVDMVN---DPEMLDLVEMEVRELLLSYKYPGDEIPIIRGSALKALQGEIEYKKSI-------LKLMEAVDNYIPQPERSFDRPFLMPVEDVFSIAGRGTVVTGRVEQGQIKIGDAVEIIGLGSTVK 253          
The following BLAST results are available for this feature:
BLAST of FC928901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EIMTE9.188e-3235.11Elongation factor Tu, apicoplast OS=Eimeria tenell... [more]
EFTU_DESVV9.188e-3236.67Elongation factor Tu OS=Desulfovibrio vulgaris sub... [more]
EFTU_DESVH9.188e-3236.67Elongation factor Tu OS=Desulfovibrio vulgaris (st... [more]
EFTU_CLOAB9.188e-3235.50Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_BORGA9.188e-3233.21Elongation factor Tu OS=Borrelia garinii GN=tuf PE... [more]
EFTU_ANADE9.188e-3234.72Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU_ACIBL9.188e-3235.36Elongation factor Tu OS=Acidobacteria bacterium (s... [more]
EFTU1_STRAW9.188e-3234.29Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
CYSN_PHOPR9.188e-3232.22Sulfate adenylyltransferase subunit 1 OS=Photobact... [more]
EFTU_RECAM1.200e-3132.73Elongation factor Tu, mitochondrial OS=Reclinomona... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928901 ID=FC928901; Name=FC928901; organism=Citrus clementina; type=EST; length=854bp
AAGGTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAA
CATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGAC
ACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTC
GAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGT
GCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTG
CCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCT
CCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGC
TGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTG
GTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACC
CTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCAC
CCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTT
CCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCC
ATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGA
CTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGC
CGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTAC
AAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGT
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