FC928901

Overview
NameFC928901
Unique NameFC928901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_SOLUE (Elongation factor Tu OS=Solibacter usitatus (strain Ellin6076) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 89/265 (33.58%), Postives = 134/265 (50.57%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGH+D GK+T T  +   L              A    K  F+    +D    E+ RGITI +A  ++ET K +   +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV  ++   NK+D           D +  EV   LK   +  + +P V +S      G+   E++ +        L++A+D+ I  P+R  DKP  +P++D++ I G GTV  GR+E G+ K G
Sbjct:    8 RSKPHVNIGTIGHIDHGKTTLTAAITKVL--------------AKHNPKNKFRSFDSIDNAPEEKARGITIAVAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAIVVVAATDGPMP-------QTREHILLARQVGVPYIVVAMNKVDMVD---DSELLDLVELEVRELLKSYQFPGDDLPVVRVSALGALNGEPQWEKTVD-------ELMEAVDSYIPMPERAIDKPFIMPIEDIFSIQGRGTVVTGRIERGICKVG 241          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_PELPB (Elongation factor Tu OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 91/263 (34.60%), Postives = 134/263 (50.95%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 807
            ++K H+NI  IGHVD GK+T T  +   L               A+    + +    +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P V    +   EGD   E++          L+DA+D+ I +P R  DKP  +P++DV+ I G GTV  GR+E G +K
Sbjct:    8 RDKPHVNIGTIGHVDHGKTTLTAAITSVL---------------AKQGLAAARDFGSIDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPSLVVFLNKVDIADPEL----IELVELELRELLTQYNFPGDDIPIVKGSALKALEGDPEGEKAI-------MELMDAVDSFIPDPVRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIK 237          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_NITSB (Elongation factor Tu OS=Nitratiruptor sp. (strain SB155-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 98/278 (35.25%), Postives = 139/278 (50.00%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT 849
            K K H+NI  IGHVD GK+T T  +   L           EK  AE  KR +     +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L +  +  + VP +  S  +     +     +W  K   L++A+D  I  P+R  DKP  +P++DV+ I G GTV  GR+E GV+K G    +V   P+  TT
Sbjct:    8 KTKPHVNIGTIGHVDHGKTTLTAAITAVLA----------EKGYAE--KRDYDQ---IDNAPEERERGITIATSHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKEDMVD---DPELLELVEMEVRELLNEYDFPGDDVPVIAGSALKALEEAKEGKLGEWSEKILKLMEAVDEYIPTPERDIDKPFLMPIEDVFSISGRGTVVTGRIERGVVKVGDEIEIVGLRPTQKTT 260          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_FUSNN (Elongation factor Tu OS=Fusobacterium nucleatum subsp. nucleatum GN=tuf PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 95/277 (34.30%), Postives = 140/277 (50.54%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT 849
            + K H+NI  IGHVD GK+TTT              I +   +    +K  F     +D    E+ERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  + +P +  S     N  E+       K   L++A+DN I  P+R  D+P  +P++DV+ I G GTV  GRVE GV+K G    +V   P+  TT
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTTTA------------AISKVLSDKGWASKVDFDQ---IDAAPEEKERGITINTAHIEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLSRQVGVPYIVVYLNKSDMVE---DEELLELVEMEVRELLTEYGFPGDDIPVIRGSSLGALNGEEKWVE----KILELMEAVDNYIPTPERAVDQPFLMPIEDVFTITGRGTVVTGRVERGVIKVGEEIEIVGIKPTTKTT 255          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 94/270 (34.81%), Postives = 135/270 (50.00%), Query Frame = 1
Query:   37 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV  S       +  +  L      W  K   L+DA+D  I  P+RP DK   + ++DV+ I G GTV  GR+E G +K G  V
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFVSGSALLALESLSSNPKLMRGEDKWVDKILALMDAVDEYIPTPERPIDKSFLMAIEDVFSITGRGTVATGRIERGAIKVGETV 253          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU2_DESPS (Elongation factor Tu 2 OS=Desulfotalea psychrophila GN=tuf2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 92/269 (34.20%), Postives = 137/269 (50.93%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV----GYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP---TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+N+  IGH+D GK+T T  +   L               +   + SF     +DK   E+ERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  M+   NK D           DE+++ V   L+++     +  + VPF+      G  ++      D  K      L++A+D+ I EP+R  D+P  +P++DV+ I G GTV  GRVE G++K G
Sbjct:    8 RTKPHVNVGTIGHIDHGKTTLTAAITRVL---------------STKGQASFTDFSDIDKAPEEKERGITIATAHVEYETVNRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGAMP-------QTREHILLARQVGVPAMVVFLNKCDMVDD-------DELIELVEMELRELLDDYEFPGDDVPFI-----HGSALLALENPEDEDKAACIWALMEAIDSYIPEPERDVDQPFLMPVEDVFSISGRGTVATGRVERGIIKVG 242          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: CYSN_CHRVO (Sulfate adenylyltransferase subunit 1 OS=Chromobacterium violaceum GN=cysN PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 91/279 (32.62%), Postives = 140/279 (50.18%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY---------AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG 840
            + K  +  +  G VD GKST  G L++     D ++I  FE + A + + S KY         A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S ++ A+++ID+  G          QTR H+ +   LG++ +I   NKMD     YS+  Y+ I  E  ++ + +  +   + FVPIS   GDN++ R+    WY+G TL+  L+ +           RLP+Q V +         G + +G + PG  V   PSG
Sbjct:   20 ENKDMLRFITCGSVDDGKSTLIGRLLH-----DSKLI--FEDQLAAIERDSKKYNTTDQDIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIIADCPGHEQYTRNMATGASTSNLAIILIDARRG-------VQTQTRRHSYIVSLLGIRHVIVAVNKMDLV--DYSEDVYNRIRDEYLTFAEHL--DIPDIHFVPISALRGDNVVSRTEAAPWYQGATLMHLLETVQISHDAPLSAFRLPVQYVNRPNLDFRGFCGTIASGAVHPGDAVVALPSG 280          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_THEAQ (Elongation factor Tu OS=Thermus aquaticus GN=tuf PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 96/269 (35.69%), Postives = 134/269 (49.81%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV------PISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +       +     +   +R  N +W  K   LLDA+D  I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMHKNPKTKRGEN-EWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 251          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 84/271 (31.00%), Postives = 137/271 (50.55%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP------TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            + K H+N+  IGHVD GK+T T  +   L  + +   +R+++               +D    ER RGITI+ A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  E+   L K  +  +++P +  S  +    ++ +      + P       L+DA+D+ I  P+R  DKP  + ++DV+ I G GTV  GR+E G +K G  V
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAALGQATAKRYDE---------------IDAAPEERARGITINTAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKVDMVD---DEELLELVELEIRELLSKYDFPGDEIPIIRGSALKALERMQANPKTQRGEDPWVDKIYELMDAVDSYIPTPERDVDKPFLMAVEDVFSITGRGTVATGRIERGRIKVGETV 253          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 90/265 (33.96%), Postives = 135/265 (50.94%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVP---ISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK++ T  +                K  A+    +F     +DK   ERERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P   +   EGD     ++++       L+ A+D  I  P+R +DKP  +P++DV+ I G GTV  GRVE G +K G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDQIDKAPEERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDSIPIIPGSALKALEGD-----TSDIGEGAILKLMAAVDEYIPTPQRATDKPFLMPVEDVFSIAGRGTVATGRVERGKIKVG 242          
The following BLAST results are available for this feature:
BLAST of FC928901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_SOLUE1.567e-3133.58Elongation factor Tu OS=Solibacter usitatus (strai... [more]
EFTU_PELPB1.567e-3134.60Elongation factor Tu OS=Pelodictyon phaeoclathrati... [more]
EFTU_NITSB1.567e-3135.25Elongation factor Tu OS=Nitratiruptor sp. (strain ... [more]
EFTU_FUSNN1.567e-3134.30Elongation factor Tu OS=Fusobacterium nucleatum su... [more]
EFTU_CYAPA1.567e-3134.81Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU2_DESPS1.567e-3134.20Elongation factor Tu 2 OS=Desulfotalea psychrophil... [more]
CYSN_CHRVO1.567e-3132.62Sulfate adenylyltransferase subunit 1 OS=Chromobac... [more]
EFTU_THEAQ2.047e-3135.69Elongation factor Tu OS=Thermus aquaticus GN=tuf P... [more]
EFTU_SYNJA2.047e-3131.00Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_STIAU2.047e-3133.96Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928901 ID=FC928901; Name=FC928901; organism=Citrus clementina; type=EST; length=854bp
AAGGTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAA
CATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGAC
ACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTC
GAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGT
GCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTG
CCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCT
CCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGC
TGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTG
GTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACC
CTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCAC
CCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTT
CCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCC
ATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGA
CTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGC
CGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTAC
AAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGT
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