FC928901

Overview
NameFC928901
Unique NameFC928901
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length854
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_PLARO (Elongation factor Tu OS=Planobispora rosea GN=tuf PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 94/261 (36.02%), Postives = 138/261 (52.87%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS-FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 807
            + K H+NI  IGH+D GK+T T         I K + +R+     E+NK + F     +DK   E+ RGITI IA  +++T K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD     S          L++A+D NI EP R +DKP  +P++DV+ I G GTV  GR+E GV+K
Sbjct:    8 RTKPHMNIGTIGHIDHGKTTLTA-------AITKVLHDRYP----ELNKATPFDK---IDKAPEEKARGITISIAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSAQEFPGDDLPVVRVSALKALEGDEKWADSI-------IELMNAVDENIPEPPRDTDKPFLMPIEDVFSITGRGTVVTGRIERGVVK 240          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLE (Elongation factor Tu OS=Mycobacterium leprae GN=tuf PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 99/264 (37.50%), Postives = 142/264 (53.79%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 804
            + K H+NI  IGHVD GK+T T         I K + ++F      +N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPN----LNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_MYCLB (Elongation factor Tu OS=Mycobacterium leprae (strain Br4923) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 99/264 (37.50%), Postives = 142/264 (53.79%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPT-LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 804
            + K H+NI  IGHVD GK+T T         I K + ++F      +N+ R+F     +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E  P V +S     EGD          W +  T L+DA+D +I  P R +DKP  +P++DV+ I G GTV  GRVE GV+
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFPN----LNESRAFDQ---IDNAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELLELVEMEVRELLAAQEFD-EDAPVVRVSALKALEGD--------AKWVESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVV 238          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBP (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 90/260 (34.62%), Postives = 130/260 (50.00%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 807
            + K H+NI  IGHVD GK+T T  +   L            K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D           + + +E+   L K  +  +K PF  ISG     +    ++L       L++A+D  +  P R  DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTAAITTTLA-----------KLVGGKNK-AIAYDQI-DNAPEEKARGITIATSHQEYETPNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPF--ISGSALKALEGEDSDLGMKSILKLMEAVDTYVPNPTRIVDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_LEPBA (Elongation factor Tu OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 90/260 (34.62%), Postives = 130/260 (50.00%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK 807
            + K H+NI  IGHVD GK+T T  +   L            K     NK +  Y  + D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D           + + +E+   L K  +  +K PF  ISG     +    ++L       L++A+D  +  P R  DKP  +P++DV+ I G GTV  GRVE GVLK
Sbjct:    8 RSKPHLNIGTIGHVDHGKTTLTAAITTTLA-----------KLVGGKNK-AIAYDQI-DNAPEEKARGITIATSHQEYETPNRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGAMP-------QTKEHILLARQVGVPYIVVYLNKADMLAADERDDMVEMVKEEIKDLLNKYNFPGDKTPF--ISGSALKALEGEDSDLGMKSILKLMEAVDTYVPNPTRIVDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_KINRD (Elongation factor Tu OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 95/263 (36.12%), Postives = 138/263 (52.47%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVL 804
            + K H+NI  IGH+D GK+T T         I + + ++F     E+NK S      +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH +LA  +GV  ++   NK D       +   + +  EV   L    +  + VP V +S     EGD         +W  K   L+DA+D  I EP+R  D+P  +P++DV+ I G GTV  GR+E GVL
Sbjct:    8 RTKPHVNIGTIGHIDHGKTTLTA-------AITRVLHDKFP----ELNKASAFDQ--IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVILARQVGVPYIVVALNKADMVE---DEELLELVEMEVRELLSSYEFPGDDVPVVRVSALKALEGD--------AEWGDKLMELMDAVDTAIPEPERAIDQPFLMPIEDVFTITGRGTVVTGRIERGVL 239          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_BORAP (Elongation factor Tu OS=Borrelia afzelii (strain PKo) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 89/268 (33.21%), Postives = 140/268 (52.24%), Query Frame = 1
Query:   22 IMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            +  + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E        K   LL+++DN  + P+R  DKP  L ++DV+ I G GTV  GR+E GV+K G  V
Sbjct:    5 VFQRTKPHMNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPEATKCVK--ELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGVIKVGQEV 244          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_BACWK (Elongation factor Tu OS=Bacillus weihenstephanensis (strain KBAB4) GN=tuf PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 90/275 (32.73%), Postives = 134/275 (48.73%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG--------DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVV 822
            + K H+NI  IGHVD GK+T T  +   + K GG + R  ++                  +D    ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LL+  +GV  ++   NK D       +   + +  EV   L + G+  + +P +  S  +         + +IE  T +D Y           I  P+R +DKP  +P++DV+ I G GTV  GRVE G++K G VV
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLAKAGGAEARGYDQ------------------IDAAPEERERGITISTAHVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLSRQVGVPYIVVFLNKCDMVD---DEELLELVEMEVRDLLSEYGFPGDDIPVIKGSALKALQGEAEWEEKIIELMTEVDAY-----------IPTPERETDKPFLMPIEDVFSITGRGTVATGRVERGIVKVGDVV 243          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU2_THET8 (Elongation factor Tu-B OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufB PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 95/268 (35.45%), Postives = 133/268 (49.63%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNL-----DWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+N+  IGHVD GK+T T  L +                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +  S       + R+        +W  K   LLDA+D  I  P R  DKP  +P++DV+ I G GTV  GR+E G +K G
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTFVT--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGKVKVG 251          
BLAST of FC928901 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPW (Elongation factor Tu OS=Synechococcus sp. (strain WH7803) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 87/263 (33.08%), Postives = 132/263 (50.19%), Query Frame = 1
Query:   31 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG 813
            + K H+NI  IGHVD GK+T T  +   L    +  ++ +                 +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG +  +   E    +D      L+ A+D NI EP+R  DKP  + ++DV+ I G GTV  GR+E G++K G
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITNVLAKKGQAKVQDYAD---------------IDGAPEERERGITINTAHVEYETDTRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLSSYDFPGDDIPVVQVSGLKAIEGEAEWEAKID-----ELMQAVDANIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVG 240          
The following BLAST results are available for this feature:
BLAST of FC928901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_PLARO2.047e-3136.02Elongation factor Tu OS=Planobispora rosea GN=tuf ... [more]
EFTU_MYCLE2.047e-3137.50Elongation factor Tu OS=Mycobacterium leprae GN=tu... [more]
EFTU_MYCLB2.047e-3137.50Elongation factor Tu OS=Mycobacterium leprae (stra... [more]
EFTU_LEPBP2.047e-3134.62Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_LEPBA2.047e-3134.62Elongation factor Tu OS=Leptospira biflexa serovar... [more]
EFTU_KINRD2.047e-3136.12Elongation factor Tu OS=Kineococcus radiotolerans ... [more]
EFTU_BORAP2.047e-3133.21Elongation factor Tu OS=Borrelia afzelii (strain P... [more]
EFTU_BACWK2.047e-3132.73Elongation factor Tu OS=Bacillus weihenstephanensi... [more]
EFTU2_THET82.047e-3135.45Elongation factor Tu-B OS=Thermus thermophilus (st... [more]
EFTU_SYNPW2.673e-3133.08Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BA11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928901 ID=FC928901; Name=FC928901; organism=Citrus clementina; type=EST; length=854bp
AAGGTTTTATACTAGATTTGCATAATGGGTAAGGAGAAGACTCACATCAA
CATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCGGAC
ACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTC
GAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTGGGT
GCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATATTG
CCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCT
CCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGC
TGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTG
GTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACC
CTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCCACCAC
CCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTT
CCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCC
ATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGA
CTGGTACAAGGGTCCAACCCTGCTGGACGCTCTTGACAATATCAATGAGC
CGAAGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTAC
AAGATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGT
CCTCAAGCCTGGTATGGTGGTGACATTTGGCCCCTCTGGATTGACAACTG
AGGT
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