FC928915

Overview
NameFC928915
Unique NameFC928915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 47/158 (29.75%), Postives = 71/158 (44.94%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTG---VGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            G+A  +G  + V+VY    ISG H NPAVT     + +    +   Y++AQ LGA    G ++         +GG          TG     L  EII TF L++ +       R+     +  LA L +G  + +  L   P++G  +NP RS+G A
Sbjct:   78 GVAIVWGLAVMVMVYAVGHISGAHFNPAVTLAFATSGRFPWRQLPAYVLAQMLGATLASGTLRLM-------FGGRHEHFPGTLPTGSEVQSLVIEIITTFYLMFVISGVATDNRA-----IGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPA 223          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: NIP1_NICAL (Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 1
Query:  226 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVG----LVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            GI   +G ++ V+VY    ISG H NPAVT    +  +    +  +Y++AQ +G+I   G    L     ++Y+     G+N        G  LA EII +F+L++ +   ATD      D  +  +A + +G  + +      PI+G  +NP RS+G A
Sbjct:   76 GICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPLYIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSN--------GQSLAIEIIISFLLMFVISGVATD------DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPA 221          
The following BLAST results are available for this feature:
BLAST of FC928915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
NIP11_MAIZE6.305e-1129.75Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP1_NICAL8.235e-1130.00Probable aquaporin NIP-type OS=Nicotiana alata PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928915 ID=FC928915; Name=FC928915; organism=Citrus clementina; type=EST; length=690bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCACCAAGGAGTCTCGGGGCCGCT
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