FC928915

Overview
NameFC928915
Unique NameFC928915
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NP RS G A
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPA 221          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.002e-24
Identity = 73/201 (36.32%), Postives = 104/201 (51.74%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            +F++A+ AEF+A            I +  + +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NP RS G A
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPA 221          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.309e-24
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            +F++A+ AEF+A            I +    +P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NP RS G A
Sbjct:   36 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPNVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPA 224          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.808e-24
Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++           G G   +    + G GL  E+I TF LV+T+F++ D KR    + V     L IGF+V + HL  I  TG  +NP RS G A
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPA 221          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.447e-23
Identity = 72/201 (35.82%), Postives = 101/201 (50.25%), Query Frame = 1
Query:   88 SFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            +F++A+ AEF+A            I +     P         V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++           G G   +    S G GL  E+I TF LV+T+F++ D KR    + V     L IG +V + HL  I  TG  +NP RS G A
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP-------VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGISVAIGHLFAINYTGASMNPARSFGPA 221          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 63/154 (40.91%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  229 IAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            IA+ FG ++  L      +SG HINPAVT GL +   VS+++   Y+V+QC+GAI+G  ++KA   S     G G   +A G STG G+  E + TF+LV+ V    D +R    + V   APL IG ++   HLA I  TG  +NP RS G A
Sbjct:   57 IAFTFGLVVATLAQAFGHVSGCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEVVG-GLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCDNRR----TDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPA 205          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.468e-23
Identity = 57/167 (34.13%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLV-------KAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            G+G+LG+A+AFG  +  + +    ISG H+NPAV+FGL +  +      + Y++AQ +GAI   G++         F+ S      G A+    GY+ G G  +E++ T + +  +  ATD +  A        AP+ IG A+ ++HL +IP+T T +NP RS G A
Sbjct:   34 GIGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPAG------FAPIAIGLALTLIHLISIPVTNTSVNPARSTGPA 194          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.379e-23
Identity = 72/206 (34.95%), Postives = 104/206 (50.49%), Query Frame = 1
Query:   73 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            EL   SF+RA++AEF+             +G   +  P  +       G+LG A AFG     LV     +SGGHINPA+T    LA ++SL RA+ Y++AQ LGA++G G++     +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ + HL  IP TG G+NP RS   A
Sbjct:    3 ELRSSSFWRAILAEFLGSLLYTLLG----LGASLRWAPGPH-------GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPA-AVRGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPA 192          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.225e-22
Identity = 74/208 (35.58%), Postives = 106/208 (50.96%), Query Frame = 1
Query:   73 ELTKWSFYRALIAEFIAXXXXXXXXXXXXIGYKSQTDPAKNVDGCAG-VGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            E T     +A +AEFI+            I Y   T+     DG A   G++  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R ++Y++AQ LG+I    L+     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+ IGF V    L     TG  +NP  S G A
Sbjct:   13 EATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTN-----DGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPA 206          
BLAST of FC928915 vs. ExPASy Swiss-Prot
Match: AQPZ_BRUAB (Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.089e-22
Identity = 65/166 (39.16%), Postives = 89/166 (53.61%), Query Frame = 1
Query:  211 GVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGL--VKAFQKSYYTRYG---GGANELA-DGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPPRSLGAA 690
            G+G LG+A AFG  +  + Y   GISGGH NPAV+ GL +A ++     + Y VAQ LGAI+   +  V A  K  ++  G    G  EL+  GYS   GL  EII T   +  +  +T     A        AP+ IGF + ++HL +IP+T T +NP RS G A
Sbjct:   33 GIGFLGVALAFGLTVLTMAYAVGGISGGHFNPAVSLGLTVAGRLPAKDLIPYWVAQVLGAIAAAAILYVIASGKDGFSAGGLASNGYGELSPGGYSMMAGLLIEIILTAFFIIIILGSTSSLAPAG------FAPIAIGFGLTLIHLVSIPVTNTSVNPARSTGVA 192          
The following BLAST results are available for this feature:
BLAST of FC928915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
AQP4_RAT1.002e-2436.32Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_DIPME1.002e-2436.32Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQP4_NOTAL1.309e-2436.32Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_HUMAN3.808e-2436.32Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_BOVIN1.447e-2335.82Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP_ANOGA2.468e-2340.91Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQPZ_PSEPK2.468e-2334.13Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
MIP_CHICK9.379e-2334.95Lens fiber major intrinsic protein OS=Gallus gallu... [more]
TIP1_MEDTR1.225e-2235.58Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQPZ_BRUAB2.089e-2239.16Aquaporin Z OS=Brucella abortus GN=aqpZ PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BB02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928915 ID=FC928915; Name=FC928915; organism=Citrus clementina; type=EST; length=690bp
GGCACGAGGCACGGCTCATATTCAGCCAAGGACTACACGGACCCACCGCC
GGAGCCGCTATTCGACGCCGTGGAGCTGACCAAATGGTCATTCTACAGAG
CCTTGATAGCTGAGTTCATAGCAACCCTGCTCTTTCTTTACGTCACTGTC
TTGACTGTCATTGGCTACAAAAGCCAGACCGATCCCGCCAAGAACGTCGA
CGGCTGTGCCGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGTGGCA
TGATCTTTGTCCTCGTTTACTGCACCGCCGGTATCTCAGGTGGTCACATT
AACCCGGCAGTGACGTTCGGACTATTCTTGGCCCGCAAGGTGTCGTTGGT
CCGTGCTGTGATGTACATGGTGGCGCAGTGCCTTGGTGCTATCTCCGGTG
TTGGGTTGGTCAAGGCTTTCCAAAAATCTTACTACACAAGGTACGGAGGT
GGGGCCAACGAGCTGGCCGATGGGTACAGCACCGGCGTTGGATTGGCCGC
CGAGATCATCGGCACCTTTGTCTTGGTTTACACTGTCTTCTCGGCCACTG
ATCCCAAGAGAAGCGCCAGAGACTCCCACGTTCCCGTTTTGGCACCGCTC
CCCATTGGATTTGCTGTGTTCATGGTACACTTGGCCACAATCCCAATCAC
TGGCACTGGCATTAACCCACCAAGGAGTCTCGGGGCCGCT
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