FC928942

Overview
NameFC928942
Unique NameFC928942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15018 contig Ccv1_Contig15018:1..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_APIME (Histone H4 OS=Apis mellifera PE=3 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.199e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VL DNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEH +RKTVTAMDVVYALK QGRTLYGFGG
Sbjct:   22 VLGDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHTKRKTVTAMDVVYALKIQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_TRICD (Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 9.403e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            VLRDNIQGITKPAIRRLARRGGVKRIS LIYEETRGVLK+FLENVIRDAVTYTEHA+  TVTAMDVVYALKRQGRTLYGFGG
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISSLIYEETRGVLKVFLENVIRDAVTYTEHAKIPTVTAMDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_USTMA (Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 73/81 (90.12%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 382
            +LRDNIQGITKPAIRRLARRGGVKRISGLIY+ETRGVLK+FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYDETRGVLKLFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG 102
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_NEUCR (Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ASPOR (Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ASPFU (Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H42_PENFN (Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H42_EMENI (Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H41_PENFN (Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
[Close]
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H41_EMENI (Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.573e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2 
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS +IYEETRGVLK FLE VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISAMIYEETRGVLKTFLEGVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of FC928942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_APIME7.199e-3793.90Histone H4 OS=Apis mellifera PE=3 SV=3[more]
H4_TRICD9.403e-3793.90Histone H4 OS=Trichogramma cacoeciae PE=3 SV=3[more]
H4_USTMA3.573e-3690.12Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4[more]
H4_NEUCR3.573e-3690.24Histone H4 OS=Neurospora crassa GN=hhf-1 PE=3 SV=2[more]
H4_ASPOR3.573e-3690.24Histone H4 OS=Aspergillus oryzae GN=hhfA PE=3 SV=3[more]
H4_ASPFU3.573e-3690.24Histone H4 OS=Aspergillus fumigatus GN=hhfA PE=3 S... [more]
H42_PENFN3.573e-3690.24Histone H4.2 OS=Penicillium funiculosum GN=H4.2 PE... [more]
H42_EMENI3.573e-3690.24Histone H4.2 OS=Emericella nidulans GN=hhfB PE=3 S... [more]
H41_PENFN3.573e-3690.24Histone H4.1 OS=Penicillium funiculosum GN=H4.1 PE... [more]
H41_EMENI3.573e-3690.24Histone H4.1 OS=Emericella nidulans GN=hhfA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BC09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928942 ID=FC928942; Name=FC928942; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCACCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGAGTAGAATTAACGATAGATCGTTGTGAAGCTT
CTTGGTATAAAAAAAAAAAAAAAAAA
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