FC928942

Overview
NameFC928942
Unique NameFC928942
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_SCHPO (Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.666e-36
Identity = 72/82 (87.80%), Postives = 80/82 (97.56%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVY+LKRQGRT+YGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVYSLKRQGRTIYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_CANGA (Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 7.960e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_ARXAD (Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 7.960e-36
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRIS LIYEETR VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISALIYEETRSVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_YEAST (Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEE R VLK FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H41_ASHGO (Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 73/82 (89.02%), Postives = 79/82 (96.34%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYE+ R VLK FLE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEDVRAVLKSFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H42_ASHGO (Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 7.450e-34
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 2
Query:  140 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +LRDNIQGITKPAI RLARRGGVKRISGLIYE+ R VLK  LE+VIRDAVTYTEHA+RKTVT++DVVYALKRQGRTLYGFGG
Sbjct:   22 ILRDNIQGITKPAILRLARRGGVKRISGLIYEDVRAVLKSVLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG 103          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_STYLE (Histone H4 OS=Stylonychia lemnae PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.660e-33
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_OXYNO (Histone H4 OS=Oxytricha nova PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.660e-33
Identity = 70/81 (86.42%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            L++ I GITKPAIRRLARRGGVKRIS LIYEETR VL+ FLENVIRD+VTYTEHA+RKTVTA+DVVYALKRQGRTLYGFGG
Sbjct:   24 LKETIMGITKPAIRRLARRGGVKRISSLIYEETRNVLRSFLENVIRDSVTYTEHAKRKTVTALDVVYALKRQGRTLYGFGG 104          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_EUPCR (Histone H4 OS=Euplotes crassus PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.405e-32
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  143 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            LR+ I G+TKPAIRRLARRGGVKRIS L+YEETR VLK FLE+VIRD+VTYTEHA+RKTVTA+DVVYALKRQG+TLYGFGG
Sbjct:   27 LRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESVIRDSVTYTEHAKRKTVTALDVVYALKRQGKTLYGFGG 107          
BLAST of FC928942 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.397e-32
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 2
Query:  152 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 385
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103          
The following BLAST results are available for this feature:
BLAST of FC928942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_SCHPO4.666e-3687.80Histone H4 OS=Schizosaccharomyces pombe GN=hhf1 PE... [more]
H4_CANGA7.960e-3690.24Histone H4 OS=Candida glabrata GN=HHF1 PE=3 SV=3[more]
H4_ARXAD7.960e-3690.24Histone H4 OS=Arxula adeninivorans GN=ahsb4 PE=3 S... [more]
H4_YEAST1.773e-3589.02Histone H4 OS=Saccharomyces cerevisiae GN=HHF1 PE=... [more]
H41_ASHGO1.773e-3589.02Histone H4.1 OS=Ashbya gossypii GN=HHF1 PE=3 SV=3[more]
H42_ASHGO7.450e-3486.59Histone H4.2 OS=Ashbya gossypii GN=HHF2 PE=3 SV=3[more]
H4_STYLE1.660e-3386.42Histone H4 OS=Stylonychia lemnae PE=3 SV=2[more]
H4_OXYNO1.660e-3386.42Histone H4 OS=Oxytricha nova PE=3 SV=2[more]
H4_EUPCR1.405e-3283.95Histone H4 OS=Euplotes crassus PE=1 SV=3[more]
H4_TETTH2.397e-3287.18Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BC09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928942 ID=FC928942; Name=FC928942; organism=Citrus clementina; type=EST; length=626bp
GGCACGAGGCAAAAAAGTAAAATTGTCACGAATCACTCTGATTTATTCAT
CAGACACGCAATATCAGAGAAAAATTATGTCGGGGCGTGGGAAGGGAGGC
AAGGGGTTGGGAAAGGGAGGAGCAAAGCGTCACCGTAAGGTTCTTCGCGA
TAACATTCAGGGAATCACAAAGCCCGCAATCCGGCGTCTGGCTCGTCGGG
GTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACACGTGGCGTT
CTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGA
GCACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCA
AGAGGCAGGGCAGGACTCTCTATGGGTTTGGTGGTTAAAGAAGTTGGTAT
CGCTTGTTTGTGATGGTTGTAAAGAGAGAAGTCTTGCTGTCAAGAAGCTT
TTGTGGTTCTGTTTCTAGGGTTAGGACTTGTGCGTTTTCTTTCTGGTTAA
ATGGGAATCTTGGTTTAATTTGTTAATGGTGTTTTCATTTTGTAACGTTA
ATTACCCCTATGATTTTGAGTAGAATTAACGATAGATCGTTGTGAAGCTT
CTTGGTATAAAAAAAAAAAAAAAAAA
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