FC928965

Overview
NameFC928965
Unique NameFC928965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length526
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1879 contig Ccv1_Contig1879:372..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.283e-16
Identity = 49/103 (47.57%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            EI  VLEG L VGF T+    N L  K +  G+VFVFP+GL+HFQ N G   AA  +A NSQ  G   IA T+F A P +  D L KAF++D   V  ++ KF
Sbjct:  116 EIIFVLEGVLEVGFITTA---NKLFTKTVTAGEVFVFPRGLVHFQQNRGHGPAAVIAAFNSQLQGTQAIAATLFAAAPPVPSDVLAKAFRVDVPQVDAIKAKF 215          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E+  V+ G +  GF ++        +KVL +G+ FV P+G+IHFQ+N+G   A   +A NSQ PG V    T+FG++P I    L K+FQ+D  I+K L++KF
Sbjct:  126 ELIHVVAGRVLAGFVSTA---GEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQVDAKIIKLLKSKF 225          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.877e-16
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTN-AAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E+  VLEG L VGF T+    N L AK + KG+VFVFP+GLIH+Q N  K   A+  SA NSQ PG  +IA T+F A P+I    L   FQ+    ++ +++KF
Sbjct:  115 EVIFVLEGELDVGFITTA---NKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIKSKF 215          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.086e-15
Identity = 42/103 (40.78%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E+  V+ G + VGF ++        +KV+ +G+ F  P+GL+HFQ+N G  +A A +  NSQ PG V  A  +FGA+P I    L K+FQ+D  I+K L++KF
Sbjct:  132 ELVHVITGRMLVGFVSTA---GKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEIIKLLKSKF 231          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E  LVL G +Y GF  S      L AKVL +G+V VFP+ ++HFQ N+G T A  Y A NS+ PG V I  TVFG+   I    L +AF L P  ++ L+ +F
Sbjct:  122 ETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTPAELRRLEKRF 219          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E  +V+EG++ VGF T+   N TL +KV+  GD+FV P GLIH++ N+GKT     + +    P EV +  T+    P+I  + L  AF+ D   +  L++KF
Sbjct:  126 EAGVVIEGSVLVGFLTT---NYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLRSKF 225          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKF 333
            E+  +++G +Y GF  S   NN + AKV+ +G++ V+P+GL+HFQ N+G   A     LNSQ PG   I   VFG+   IN + L KAF L    +  L+ +F
Sbjct:  122 EVAHLVKGRVYSGFVDS---NNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS--GINEELLMKAFGLSLKQIGTLKKRF 219          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFG 249
            E+  VLEGTL VGF T+    N LI++ L KGDVF FP+GL+HFQ N G   A+  +A NSQ PG  ++  T+FG
Sbjct:  116 EVVFVLEGTLDVGFLTTA---NKLISQSLKKGDVFAFPKGLVHFQKNNGDVPASVIAAFNSQLPGTQSLGATLFG 187          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.864e-13
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPNIVKDLQNKFI 336
            E  +VL G +Y GF TS   ++ ++AKVL +GDVF  PQGL+HF  N G   AA Y++L+SQ PG V +AD +  A   +  D + K    D   V  ++  FI
Sbjct:  126 ETAVVLAGAVYFGFVTSYP-DSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA--PLPVDLVAKTLLTDEATVDKIRANFI 226          
BLAST of FC928965 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   25 EIFLVLEGTLYVGFATSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD-PNIVK 315
            E+ LV++G L VGF  +    N L  + L  GD+FVFP+G++HFQFN G   A A SA  S  PG V +  TVFG    I+   L K+F+ D P I+K
Sbjct:  111 ELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFKTDVPTILK 203          
The following BLAST results are available for this feature:
BLAST of FC928965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
GL11_ORYSJ1.283e-1647.57Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ3.734e-1640.78Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL24_ARATH4.877e-1646.15Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL37_ORYSJ1.086e-1540.78Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL24_ORYSJ4.128e-1544.66Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
GLT3_ARATH1.017e-1337.86Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL32_ARATH2.265e-1339.81Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GL21_ARATH2.265e-1352.00Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL51_ORYSJ3.864e-1341.35Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL92_ORYSJ8.608e-1344.90Putative germin-like protein 9-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BD11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928965 ID=FC928965; Name=FC928965; organism=Citrus clementina; type=EST; length=526bp
CTCGTGCTTTATTCGGCACGAGGCGAAATCTTCTTAGTCCTGGAAGGAAC
TCTTTATGTCGGTTTTGCGACATCAGACCAACTGAATAACACACTCATCG
CAAAAGTTCTAAATAAGGGAGATGTTTTTGTGTTTCCACAAGGTTTGATT
CACTTCCAATTCAACATTGGAAAAACAAATGCAGCTGCCTATTCTGCTCT
AAACAGCCAATTCCCGGGTGAAGTTACCATAGCCGACACAGTCTTTGGAG
CCAATCCTTCAATCAATCCCGATTTTCTTGGCAAGGCATTCCAGTTGGAC
CCAAACATAGTGAAAGATCTTCAAAATAAGTTCATTAATGGCAATTAGGA
GAAGGAATTAATGAGCTTTAATATAAATGGCCTCTTCACTAGAGGCTGTA
TTACTTTATCTCCAGATTATCATATCTTAATTAATGTAATAAAAGAGGTC
TCTCATGAACCTCTCTCCAGGCTGACTGTGGCCATGTAATAAACATAATT
GTTATTGTTAAAAAAAAAAAAAAAAA
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