FC928997

Overview
NameFC928997
Unique NameFC928997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC928997_ssr496 microsatellite FC928997_ssr496:496..505. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6637 contig Ccv1_Contig6637:54..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  107 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +NAP +    D  A      D +E P ++VF  D+PGLK  ++KV+VED N+L ISGER  E E+    + R+ER  GKFMR+F LPENA VE + A  ++GVL+VTV
Sbjct:   36 TNAPAK----DVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTV 139          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +  A A    D KE P ++VF  D+PGLK  ++KV+VED NVL ISGER +E+E+   K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 144          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.869e-20
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 2
Query:  146 AMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            A   T  D KE P ++VF  D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   42 AFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTV 136          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.748e-20
Identity = 51/110 (46.36%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  101 KSSNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            K  + PT +   +  A   T  D KE   ++V   D+PGLK  ++KVQ+EDD VL ISGER  E+E     + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+
Sbjct:   28 KDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTI 137          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.895e-20
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +  A A T  D KE P ++VF  D+PGLK  ++KV+VE+D VL ISGER  E+E     + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   40 ETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.349e-20
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 2
Query:  107 SNAPTRTYVRDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +NAP      D  A      D +E P ++VF  D+PGL+  ++KV+VED N+L ISGER  E E+   K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   37 ANAPAM----DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 2
Query:  167 DVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            D KE P  +V +VD+PGLK  DIK++VE++ VL +SGERK+EE+K G  + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.090e-19
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  137 DAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            +  A A    D KE P ++VF  D+PGLK  ++KV+V+D N+L ISGER +E+E+   ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   47 ETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.424e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 2
Query:  134 RDAKAMAATPADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLISGERKREEEKDGAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            ++  A   T  D KE P ++VF  D+PGLK  ++KV++E+  VL ISGER +E+E+   K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   42 KETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
BLAST of FC928997 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.173e-19
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  161 PADVKEYPNSYVFIVDMPGLKSGDIKVQVEDDNVLLI-------SGERKREEEKDGAKYVRMERRVG--KFMRKFVLPENANVEAISAVCQDGVLTVTV 430
            P D+ E P  Y F++D+PGL   DI+V +E+D VL++       +G+RKREEE+   KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV
Sbjct:   56 PVDIMETPGEYAFVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTV 154          
The following BLAST results are available for this feature:
BLAST of FC928997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP17_ARATH1.682e-2048.1517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS181_ORYSJ1.682e-2052.0418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP13_SOYBN2.869e-2053.6817.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP15_SOYBN3.748e-2046.3617.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE4.895e-2051.0217.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH8.349e-2047.2217.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP41_PEA1.090e-1950.0022.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS17A_ORYSJ1.090e-1948.9817.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA1.424e-1947.4717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS186_ORYSJ3.173e-1949.4918.6 kDa class III heat shock protein OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG02RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC928997 ID=FC928997; Name=FC928997; organism=Citrus clementina; type=EST; length=740bp
CAAAAGAATGGATTTCAGAATCATGGGTTTGGACTCATCGCCACTCTTTT
CAACTCTGCAGCACATGATGGAGATGGGGGCGGACGACTCCGCTGACAAC
AAGTCATCCAACGCGCCGACGCGCACGTACGTGAGAGACGCCAAGGCAAT
GGCGGCGACGCCTGCGGACGTGAAGGAGTATCCGAACTCGTACGTGTTCA
TCGTCGATATGCCCGGACTGAAGTCGGGGGACATCAAGGTCCAAGTGGAG
GACGACAATGTGCTGCTCATAAGCGGTGAGAGGAAGCGGGAGGAGGAGAA
AGATGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTTGGCAAGTTTATGA
GGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATTTCGGCGGTG
TGTCAGGACGGAGTGTTGACTGTGACTGTCGATAAGCTGCCACCGCCGGA
GCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAACTTTGAGAG
AGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTATTTGCCGGTTG
TTATGAATAATTTTGCTTGTGGGTTTGACGGTACTATGCCTCTGTAATCT
CCTCTTCCTTTTTCTTTTTTTCTCTTTCTTCCCTTTTTTGTCCAAAATTC
TCTCTGTTCACTGGTTTGTGGTTCGGTCTTTGGCATTCCGGAAGGGAAGC
TGACGGCCGTCTACTGGTAGACATCTAGTTGTTATAATTA
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