FC929003

Overview
NameFC929003
Unique NameFC929003
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15109 contig Ccv1_Contig15109:33..884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC929003 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.096e-56
Identity = 115/267 (43.07%), Postives = 167/267 (62.55%), Query Frame = 1 
Query:   52 SKSKILFIGGTGYIGKFIVEASAKAGHPTFVLVRESTLSDPSKSQLLDHFKKLGVNLVIGDVLNHESLVKAIKQ--VDVVISTVGHTLLGDQVKIIAAIKEAGNIKRFFPSEFGNDVDRVHAVEPAKSAFATKAKIRRAVEAEGIPYTYVASNFFAAYFLPNLSQPGATAPPRDKVVILGDGNPKAVYNKEDDIGTYTIKAVDDPRTLNKILYIKPPGNIYSFNDLVSLWERKIGKTLQRVYVPEEXVLKNIQEAAPPVNVIISIQH 846
            +K++ L +GGTG+IG+FI +AS   G+PTF+LVR   +S PSK+ ++  F+  G  ++ G + + E + K +K+  +DVVIS VG   L DQ+ ++ AIK    IKRF PSEFG+DVDR   VEP  + +  K  +RRAVE  GIP+T +  N  A++   +   P    PP D+  I GDGN KA +   +DIG +T+K +DD RTLNK ++ +P  N YS N+L SLWE+KIG+TL R  V  + +L +  E   P +++ S  H
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTDPVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELASLWEKKIGRTLPRFTVTADKLLAHAAENIIPESIVSSFTH 276
The following BLAST results are available for this feature:
BLAST of FC929003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN4.096e-5643.07Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3BG11RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3BG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929003 ID=FC929003; Name=FC929003; organism=Citrus clementina; type=EST; length=852bp
AAAAAAGGAAAGAATCCCCGAAATTGAACTGAATAATTCTCGGTAATGGC
GTCGAAAAGCAAGATTCTATTCATCGGCGGTACAGGGTACATCGGCAAAT
TCATCGTCGAAGCGAGCGCGAAAGCCGGCCACCCGACGTTCGTGCTCGTG
AGAGAATCCACACTCTCCGATCCTTCCAAATCTCAGCTCCTCGATCACTT
CAAAAAACTCGGCGTCAATCTCGTCATCGGAGATGTGTTGAATCACGAGA
GCTTGGTGAAGGCGATAAAACAAGTGGACGTGGTGATATCAACGGTCGGT
CACACTTTATTAGGTGATCAGGTCAAGATTATTGCGGCCATTAAAGAAGC
TGGTAACATTAAGAGATTCTTCCCTTCAGAATTTGGGAATGATGTTGATC
GAGTCCATGCCGTTGAGCCAGCAAAATCAGCATTTGCCACAAAGGCAAAA
ATCCGCCGAGCCGTTGAGGCTGAAGGGATTCCGTATACTTATGTAGCGTC
GAATTTCTTTGCTGCTTACTTCCTTCCCAATTTGTCGCAGCCCGGGGCCA
CTGCCCCACCTAGGGATAAAGTTGTCATCTTAGGCGATGGAAATCCAAAA
GCTGTTTATAACAAGGAAGATGATATTGGAACCTATACTATCAAAGCGGT
TGATGATCCCAGAACCTTGAACAAAATCCTTTACATTAAACCCCCTGGTA
ATATTTACTCATTCAATGATCTTGTGTCCTTGTGGGAGAGAAAGATTGGC
AAAACCCTCCAAAGGGTGTACGTTCCGGAGGAGNCAGTCCTAAAGAATAT
TCAAGAAGCTGCACCTCCAGTCAATGTGATAATATCAATTCAGCACTCTG
CT
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