FC929015

Overview
NameFC929015
Unique NameFC929015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 4.158e-59
Identity = 111/169 (65.68%), Postives = 137/169 (81.07%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRMN 744
            F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KAT  M+  VEP+V YGYPNLKSVKELIYKRGYGK+NKQR+ALTDNSIIE+ LG++GIICMED IHEI TVGP+FK+A+NFLWPF           ++   ++EGGD GNRE++IN LIR+MN
Sbjct:   80 FHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.789e-55
Identity = 106/168 (63.10%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSV+ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+ED +HEI TVGP+FK A+NFLWPF           K N YV GGD GNRED IN L+R+M
Sbjct:   84 FYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.789e-55
Identity = 103/168 (61.31%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA++NML  VEPYV YG+PNLKS+KELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED IHEI T G HFK+ NN LWPF           K+ P+++GGDAGNRE  IN LI RMN
Sbjct:   79 FYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.361e-54
Identity = 102/170 (60.00%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KAT  +L  VEPY+ +GYPNL SV++L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMED IHEI TVGP FK+A+NFLWPF           +R    Y+EGG  GNRE+ IN LI+  N
Sbjct:   81 FYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.260e-54
Identity = 102/168 (60.71%), Postives = 132/168 (78.57%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRM 744
            +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKAT  ML  VEPYVTYG PNLK+V+EL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +ED IHEI TVGP+FK+A NF+WPF           ++   ++EGGDAG R+++IN L+R+M
Sbjct:   83 YYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.869e-54
Identity = 99/167 (59.28%), Postives = 126/167 (75.45%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKATL +L  +EPYV +GYPN K++ +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+ED  HEI TVGPHFKEA NFLWPF           K N +VEGGD GNRED IN L+R+M
Sbjct:   77 FYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.610e-53
Identity = 96/170 (56.47%), Postives = 131/170 (77.06%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KAT  +L  VEPYV YGYP+  ++++L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++D IHEI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   74 YYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREEFINKLVKSMN 243          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.432e-51
Identity = 90/170 (52.94%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++D IHEI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   75 YYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKAMN 244          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 202.986 bits (515), Expect = 1.432e-51
Identity = 90/170 (52.94%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++D IHEI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   75 YYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.871e-51
Identity = 92/169 (54.44%), Postives = 131/169 (77.51%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRMN 744
            +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KAT  +L   EPY+ YGYPNL +++ L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +ED IHEI TVGP+FK+ANNFLWPF           ++   +++GGD GNRE++IN L+++MN
Sbjct:   73 YYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
The following BLAST results are available for this feature:
BLAST of FC929015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_NEUCR4.158e-5965.6860S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_DROME2.789e-5563.1060S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_DICDI2.789e-5561.3160S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7_YARLI2.361e-5460.0060S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7C_SCHPO5.260e-5460.7160S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_CAEEL6.869e-5459.2860S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_ASHGO2.610e-5356.4760S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7B_YEAST1.432e-5152.9460S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST1.432e-5152.9460S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_DEBHA1.871e-5154.4460S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DA05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929015 ID=FC929015; Name=FC929015; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCTG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCTGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAATGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCATGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAG
AGCCTGTTCGATGATAGAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGTAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGTGT
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
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