FC929015

Overview
NameFC929015
Unique NameFC929015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.167e-51
Identity = 92/170 (54.12%), Postives = 128/170 (75.29%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++D IHEI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE +IN+L++ MN
Sbjct:   75 YYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.443e-51
Identity = 97/168 (57.74%), Postives = 129/168 (76.79%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRM 744
            ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTYG PN K+V+ELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +ED IHEI TVGP+FK+A NFLWPF           ++   ++EGGDAG R+++IN L+++M
Sbjct:   82 YFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.109e-51
Identity = 94/167 (56.29%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +ED IHEI TVGPHFKEAN FLW F           KR  ++  GD GNRED IN+L++RM
Sbjct:   81 FYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.109e-51
Identity = 94/167 (56.29%), Postives = 124/167 (74.25%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +ED IHEI TVGPHFKEAN FLW F           KR  ++  GD GNRED IN+L++RM
Sbjct:   81 FYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.536e-42
Identity = 89/166 (53.61%), Postives = 115/166 (69.28%), Query Frame = -1
Query:  247 YVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRR 741
            +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED IHEI  VG HFKE   FLWPF           K+   + EG  AG   + INELI++
Sbjct:   82 FVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.013e-38
Identity = 81/164 (49.39%), Postives = 109/164 (66.46%), Query Frame = -1
Query:  241 EAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNP-YVEGGDAGNREDYINELIRRMN 729
            ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN+IIEQALG+H I+ +ED ++EI  VG HF+E   FL P            ++   + EGGD GNRED IN+LI +MN
Sbjct:   84 KSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.591e-34
Identity = 74/160 (46.25%), Postives = 103/160 (64.38%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+ED IHEI   G HF+E ++FL PF           +     E G  G R D IN+LIR++N
Sbjct:   87 LAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.031e-33
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+ED IHEI   G HF+E + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   87 LAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.347e-33
Identity = 75/160 (46.88%), Postives = 103/160 (64.38%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+ED IHEI   G HF+E + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   87 LAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of FC929015 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.659e-32
Identity = 71/160 (44.38%), Postives = 102/160 (63.75%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDFIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+ED IHEI   G +F+  + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   88 LAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of FC929015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CANGA4.167e-5154.1260S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7B_SCHPO5.443e-5157.7460S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL72_PARTE7.109e-5156.2960S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE7.109e-5156.2960S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO3.536e-4253.6160S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH9.013e-3849.3960S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_MOUSE1.591e-3446.2560S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN1.031e-3346.8860S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PONAB1.347e-3346.8860S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_PIG5.659e-3244.3860S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH1DA05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DA05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929015 ID=FC929015; Name=FC929015; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCTG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCTGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAATGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCATGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAG
AGCCTGTTCGATGATAGAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGTAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGTGT
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
back to top