FC929016

Overview
NameFC929016
Unique NameFC929016
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15284 contig Ccv1_Contig15284:62..906. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ + V F  Y + G LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  G   N+ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTYIWVLF--YYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLNLSDLRAEKLVMFQRRYY 218          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.710e-14
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 2
Query:  326 VVLAMHLLALFA----PFCFTWSSLRVAFGL-YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +++ +HL  L+     P C  ++ L   FG+ Y +T  LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   74 LMVLLHLGGLYGIILVPSCKLYTCL---FGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 214          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.233e-14
Identity = 50/162 (30.86%), Postives = 72/162 (44.44%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            +HL AL+     P C  ++ L V F  Y V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y   P             P+ +WG
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY--KPGVLLLCFILPTLVPWYLWG 239          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 50/162 (30.86%), Postives = 72/162 (44.44%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            +HL AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y   P             P+  WG
Sbjct:   81 LHLGALYGITLVPSCKLYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY--KPDLLLMCFVLPTLVPWYCWG 238          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.916e-14
Identity = 47/161 (29.19%), Postives = 77/161 (47.83%), Query Frame = 2
Query:  341 HLLALFAPF-CFT---WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            HL AL+  + CFT   W +L  +F L+ ++ + GIT   HR  +H++FK    LE +       + Q   I W   HR HH++ D++ DPH+   GF++SH+ WL   K   + + G   ++ D+   P  +F +   +  P+            P   WG
Sbjct:   48 HLAALYGLYLCFTSAKWETLLFSFVLFHMSNI-GITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWLLVKKHPDVLKYGKTIDMSDVYNNPVLKFQKKYAV--PLIGTVCFALPTLIPVYCWG 205          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.809e-14
Identity = 50/160 (31.25%), Postives = 74/160 (46.25%), Query Frame = 2
Query:  335 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKD--SVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            A  L  L+A FCF  ++L             G+T   HR  SHRS+K    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF +    V+E+ G   +V DL   P  RF R  Y +  +            P+ +WG
Sbjct:   75 AQPLTLLWAYFCFLLTAL-------------GVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRFQRKYYKITVV--LMCFVVPTLVPWYIWG 218          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 49/162 (30.25%), Postives = 72/162 (44.44%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILHPIXXXXXXXXXXXFPFIVWG 808
            +HL AL+     P C  ++ L V F  Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y   P             P+ +WG
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY--KPGVLLLCFILPTLVPWYLWG 239          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.974e-14
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +H+ AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   81 LHIGALYGITLVPSCKVYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.497e-14
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L  AF  Y+++ + G+T   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  GG  N+ DL+ +    F R  Y
Sbjct:   71 LHLGALYGIILIPTCKIYTLLW-AFAYYLLSAV-GVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGLLNMSDLKAEKLVMFQRRYY 207          
BLAST of FC929016 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.447e-13
Identity = 46/139 (33.09%), Postives = 65/139 (46.76%), Query Frame = 2
Query:  338 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 739
            +HL AL+     P C  ++ L   F  Y     LGIT   HR  SHRS+K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  G   ++ DLE +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKFYTWLWGVF--YYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYY 218          
The following BLAST results are available for this feature:
BLAST of FC929016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACOD_BOVIN1.710e-1433.09Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD1_MOUSE1.710e-1431.94Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_SHEEP2.233e-1430.86Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD2_MOUSE2.916e-1430.86Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
ACO11_TRINI2.916e-1429.19Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
SCD5_BOVIN3.809e-1431.25Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD_CAPHI4.974e-1430.25Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACOD2_RAT4.974e-1432.37Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]
ACOD_PIG6.497e-1432.37Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_HUMAN1.447e-1333.09Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DA07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929016 ID=FC929016; Name=FC929016; organism=Citrus clementina; type=EST; length=844bp
AAAATCTTTCACTTTTTCACCTCTGTGTCAAGCAAGAAAAACTCAAACCG
ATAAAGTTCTGGCCTTCGGCAATTCTAACTTACAACACAAGCTAGTAAAA
ACGAGCTTTGTGTATCATGTTTATAAATATAACAAAAGAGAGTCACTAGC
AATTGTTAATGCAGCATCAATTGAATCGACAGAACCAAAGCCAGAGCCAG
AGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGAGAATTTTGTTATCT
GATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCTGGGAGGAATTGGAA
CTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGCAATGCATTTGCTTG
CTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTCTTAGGGTTGCTTTT
GGACTTTATGTTGTGACTGGACTTCTGGGTATCACTCTTTCTTTTCACAG
AAACCTTTCTCATAGGAGTTTTAAATTACCCAAATGGCTTGAGTACTTGT
TTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATCCAATTGATTGGGTA
AGCACACATAGGTATCATCACCAGTTTTGTGATTCCGAAAGGGATCCGCA
TAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAGTTGGCTGTTTGATA
AGGATTCTGTTCTCGAAAGGTGTGGAGGGCCAAACAATGTGGGAGATTTA
GAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACTTACATTCTCCATCC
AATTGCACTTGGAGGCTTGCTATATGCACTGGGAGGCTTTCCTTTCATTG
TGTGGGGAATGGTAAGGAAGCACTTTCCTTTTAGCTGTTCTGTT
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