FC929023

Overview
NameFC929023
Unique NameFC929023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A3_RAT (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Rattus norvegicus GN=Atp1a3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/140 (34.29%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  + +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  717 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQP---RNPRTDKLVNERLISMAYGQIGMIQAL 853          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A3_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Mus musculus GN=Atp1a3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/140 (34.29%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  + +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  717 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQP---RNPRTDKLVNERLISMAYGQIGMIQAL 853          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A3_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-3 OS=Homo sapiens GN=ATP1A3 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/140 (34.29%), Postives = 86/140 (61.43%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  + +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  717 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIMANIPLPLGTITILCIDLGTDMVPAISLAYEAAESDIMKRQP---RNPRTDKLVNERLISMAYGQIGMIQAL 853          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A2_PONAB (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Pongo abelii GN=ATP1A2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 49/140 (35.00%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR V+ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   +   + N     L+  A  Q+ ++  L
Sbjct:  724 KADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLVFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVN---ERLISMAYGQIGMIQAL 860          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A1_CHICK (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Gallus gallus GN=ATP1A1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/140 (34.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL    +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTCTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A1_CANFA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Canis familiaris GN=ATP1A1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 48/140 (34.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++ +K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++  L
Sbjct:  725 KADIGVAMGIVGSDASKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIGMIQAL 861          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT12A_CAVPO (Potassium-transporting ATPase alpha chain 2 OS=Cavia porcellus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    V  +    +P+  + +L+++L  D + ++ALA E     +M R P  +++  + N
Sbjct:  736 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLVYIIVGLPLPIGTITILFIDLGTDIIPSIALAYEKVESDIMNRKPRHKKKDRLVN 855          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A2_RAT (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Rattus norvegicus GN=Atp1a2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 48/140 (34.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   +   + N     L+  A  Q+ ++  L
Sbjct:  724 KADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVN---ERLISMAYGQIGMIQAL 860          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A2_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Mus musculus GN=Atp1a2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 48/140 (34.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   +   + N     L+  A  Q+ ++  L
Sbjct:  724 KADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVN---ERLISMAYGQIGMIQAL 860          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A2_HUMAN (Sodium/potassium-transporting ATPase subunit alpha-2 OS=Homo sapiens GN=ATP1A2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 48/140 (34.29%), Postives = 85/140 (60.71%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 652
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   +   + N     L+  A  Q+ ++  L
Sbjct:  724 KADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNSQTDKLVN---ERLISMAYGQIGMIQAL 860          
The following BLAST results are available for this feature:
BLAST of FC929023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A3_RAT2.813e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A3_MOUSE2.813e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A3_HUMAN2.813e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A2_PONAB2.813e-1735.00Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_CHICK2.813e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_CANFA2.813e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_CAVPO2.813e-1736.67Potassium-transporting ATPase alpha chain 2 OS=Cav... [more]
AT1A2_RAT3.674e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A2_MOUSE3.674e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A2_HUMAN3.674e-1734.29Sodium/potassium-transporting ATPase subunit alpha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DB03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929023 ID=FC929023; Name=FC929023; organism=Citrus clementina; type=EST; length=838bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCANGGGATACAATAATTTGTTAAGTTGAGCTTC
TGTTTGTTGTAGTTTCGAGGGCAGCTTGATGCTGCTAG
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