FC929023

Overview
NameFC929023
Unique NameFC929023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length838
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15026 contig Ccv1_Contig15026:1..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT12A_RABIT (Potassium-transporting ATPase alpha chain 2 OS=Oryctolagus cuniculus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 44/120 (36.67%), Postives = 76/120 (63.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNF+S+V  V  GR ++ N++K I + LT N+A L    +  +    +P+  + LL+++L  D + ++ALA E     +M R P  +++  + N
Sbjct:  797 KADIGVAMGITGSDAAKNAADMILLDDNFSSIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIILGLPLPIGTITLLFIDLGTDIIPSIALAYEKAESDIMNRKPRHKKKDRLVN 916          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT12A_HUMAN (Potassium-transporting ATPase alpha chain 2 OS=Homo sapiens GN=ATP12A PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 43/120 (35.83%), Postives = 75/120 (62.50%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  +    +P+  + +L+++L  D + ++ALA E     +M R P  + +  + N
Sbjct:  742 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYSLTKNIAELCPFLIYIIVGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKPRHKNKDRLVN 861          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A1_ANGAN (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Anguilla anguilla GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 45/120 (37.50%), Postives = 77/120 (64.17%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R   + N
Sbjct:  726 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPRNPRTDKLVN 845          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT12A_BUFMA (Potassium-transporting ATPase alpha chain 2 OS=Bufo marinus GN=ATP12A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.798e-17
Identity = 47/137 (34.31%), Postives = 83/137 (60.58%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ NI+K I + LT NVA L    +  ++   +P+  + +L+++L  D + +++ A E     +M R P   R   +  ++ + L + A  Q+ ++
Sbjct:  745 KADIGIAMGIAGSDAAKNAADMILLDDNFASIVTGVEEGRLIFDNIKKSIGYTLTKNVAELCPFLIYIIADIPLPIGTITILFIDLGTDIIPSVSFAYEKAERDIMNRKP---RRKNVDRLVNQQLALYAYLQIGII 878          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: ATP4A_XENLA (Potassium-transporting ATPase alpha chain 1 OS=Xenopus laevis GN=atp4a PE=2 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 6.267e-17
Identity = 46/137 (33.58%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +   +S  +PL  + +L++ L  D   +++LA E     +M   P   R P    ++   L + + +Q+ ++
Sbjct:  734 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELAPYLIYITASVPLPLGCITILFIELCTDIFPSVSLAYERAESDIMHLKP---RNPRRDRLVNEALAVYSYFQIGII 867          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A_TAESO (Sodium/potassium-transporting ATPase subunit alpha OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 48/137 (35.04%), Postives = 86/137 (62.77%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  ++   +PL  + +L ++L  D + A++LA E   D +M+R P   R+P    ++   L+  A  Q+ ++
Sbjct:  718 KADIGVAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRIIFDNLKKSIAYTLTSNIPEITPFLIFILADVPLPLGTITILCIDLGTDMVPAISLAYEEAED-IMKRMP---RDPFRDKLVNERLISMAYGQIGMI 850          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1A1_OREMO (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oreochromis mossambicus GN=atp1a1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 48/137 (35.04%), Postives = 85/137 (62.04%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M+R P   R P    ++   L+  A  Q+ ++
Sbjct:  727 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEISPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEKAESDIMKRQP---RNPKTDKLVNERLISIAYGQIGMM 860          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: ATC3_SCHPO (Calcium-transporting ATPase 3 OS=Schizosaccharomyces pombe GN=cta3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.069e-16
Identity = 50/165 (30.30%), Postives = 89/165 (53.94%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDV-----PLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLL---VLNFQGKRILNLESDSNAH 703
            QA++G+AMG  G++VAK++SDI++ DDNF+S+V  +  GR ++ NI +F+   L  NV  +++  V      +V     P++ V++LW N+I  +  ++ L  E     +M+R P   +  +    +  ++++   +   V L   V+   G    NL  D NAH
Sbjct:  713 QANVGIAMGQNGSDVAKDASDIVLTDDNFSSIVNAIEEGRRMFDNIMRFVLHLLVSNVGEVILLVVGLAFRDEVHLSVFPMSPVEILWCNMITSSFPSMGLGMELAQPDVMERLPHDNKVGIFQKSLIVDMMVYGFFLGVVSLMTWVVIMYGFGTGNLSYDCNAH 877          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: AT1B_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 48/137 (35.04%), Postives = 84/137 (61.31%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVL 643
            +ADIG+AMGI G++V+K+++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +    +PL  V +L ++L  D + A++LA E     +M+R P   R P+   ++   L+  A  Q+ ++
Sbjct:  708 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIVYTLTSNIPEISPFLLFILFDIPLPLGTVTILCIDLGTDMVPAISLAYEEAESDIMKRRP---RNPVTDKLVNERLISLAYGQIGMI 841          
BLAST of FC929023 vs. ExPASy Swiss-Prot
Match: ATP4A_RAT (Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus GN=Atp4a PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 44/120 (36.67%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  233 QADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITN 592
            +ADIG+AMGI G++ AK ++D+I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +M   P   R   + N
Sbjct:  736 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPRRDRLVN 855          
The following BLAST results are available for this feature:
BLAST of FC929023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT12A_RABIT3.674e-1736.67Potassium-transporting ATPase alpha chain 2 OS=Ory... [more]
AT12A_HUMAN3.674e-1735.83Potassium-transporting ATPase alpha chain 2 OS=Hom... [more]
AT1A1_ANGAN4.798e-1737.50Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_BUFMA4.798e-1734.31Potassium-transporting ATPase alpha chain 2 OS=Buf... [more]
ATP4A_XENLA6.267e-1733.58Potassium-transporting ATPase alpha chain 1 OS=Xen... [more]
AT1A_TAESO8.184e-1735.04Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_OREMO8.184e-1735.04Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC3_SCHPO1.069e-1630.30Calcium-transporting ATPase 3 OS=Schizosaccharomyc... [more]
AT1B_ARTSF2.381e-1635.04Sodium/potassium-transporting ATPase subunit alpha... [more]
ATP4A_RAT4.062e-1636.67Potassium-transporting ATPase alpha chain 1 OS=Rat... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DB03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929023 ID=FC929023; Name=FC929023; organism=Citrus clementina; type=EST; length=838bp
GATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGATT
CTACTTTGATATTTTATATTCTTACGTGAGAGTGTATTTAAAATTTCTGT
TTCATCGTCAATGTTTTTAAATCATCTGGACTACTAGAACAGTTTCGTAT
TGGAGTTAAACGAGTCAGGGTGGCCTGGCAACATGCACTAAATATGATAT
TATAGCTAACGGAATTAAGTCATTTTGAAGTTCAGGCAGACATTGGTCTG
GCAATGGGTATTCAAGGAACCGAGGTTGCTAAAGAGAGCTCAGATATTAT
TATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTC
GTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAGCTTACTGTC
AATGTCGCAGCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGGTGA
TGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGGATA
CCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTGATG
CAGAGGTCCCCAGTTGGTCGAAGAGAACCTCTTATAACTAATATAATGTG
GAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTGTCC
TGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCAATGCC
CATTCCAACAAAGTAAAAAATACTCTGATATTCAATTCTTTTGTCCTTTG
CCAGGTTAGTAAATTATCANGGGATACAATAATTTGTTAAGTTGAGCTTC
TGTTTGTTGTAGTTTCGAGGGCAGCTTGATGCTGCTAG
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