FC929025

Overview
NameFC929025
Unique NameFC929025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length796
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig306 contig Ccv1_Contig306:101..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.109e-20
Identity = 55/169 (32.54%), Postives = 97/169 (57.40%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFS-VGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDV 506
            +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+ GPG+Y +D+ GG ++ TR S  GSGSP AYGVL+  Y+ +M++          I++AT RD+ASG    V  +    +K+L  ++V
Sbjct:   34 FIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIEETRISATGSGSPMAYGVLEDQYRENMTVKEGLDLAIRAIHNATKRDSASGENIDVVVITKEAFKRLDPEEV 202          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.019e-18
Identity = 55/168 (32.74%), Postives = 86/168 (51.19%), Query Frame = 3
Query:    6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASG-GVASVYYVGPNGWKKLSGDDV 506
            I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  +IS+  A+ L ANIL+S R     V T++ G DE G  +Y +D  GG +     S GSGSP AYGVL+  Y  ++ +          I  A  RD  SG G+         G++ LS +++
Sbjct:   35 IAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATVTEEEGFRMLSEEEI 202          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.657e-16
Identity = 60/190 (31.58%), Postives = 94/190 (49.47%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRF-SVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 569
            +I+S++ KKI +I   M  T AG   D QF  R + I+  L+E+  +R+ +V   + L +N+L SYR     V  +I G D  G  +Y +D  GG ++     + GSGS  AYGVL+  +  ++ +          IY A  RD+ASG    V         K++ D+       +Y  +P  VEQ +A+
Sbjct:   36 FIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVV--------KITEDE-------FYQYSPEEVEQILAK 210          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_THEAC (Proteasome subunit beta OS=Thermoplasma acidophilum GN=psmB PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.090e-15
Identity = 51/169 (30.18%), Postives = 87/169 (51.48%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYV-GPNGWKKLSGDDV 506
            +I  ++ KK+ +I+ Y   T+AG   D Q   R +  +  L+ L  +  + +   + LL+N+L   + M   V  ++ G D T P ++ +D+ GG ++    S GSGSP+ YGVL+S Y   M++          I  A  RD+ASGG+  V  +   +G+ +L  D +
Sbjct:   33 FIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQI 200          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = 3
Query:    6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDET-GPGLYYVDSEGGRLKGTRFSV-GSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDVGEL 515
            ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D   G  L+ +D  GG  +   F+  GSGSP AYGVL++GY  DMS+          +  A  RD  SG   S+  +  +G K    +++ ++
Sbjct:   32 VADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGVKIFEDEEIEKI 203          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PB6LB_SALSA (Proteasome subunit beta type-6-B like protein OS=Salmo salar GN=psmb6l-b PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK--LSGDDVGELH 518
            Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS           +  A  RD  SGGVA +  +   G +   + GD + + H
Sbjct:   42 YVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFH 215          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PB6LA_SALSA (Proteasome subunit beta type-6-A like protein OS=Salmo salar GN=psmb6l-a PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 54/176 (30.68%), Postives = 87/176 (49.43%), Query Frame = 3
Query:    3 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGTRFSVG-SGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKK--LSGDDVGELH 518
            Y+SS+++ K+I+++  +   +AG  AD Q   +    +   H +  +    V  A+ +L  + Y+ +   L  G + AGWD + GP +Y V + GG L    F++G SGS Y YG  D+ YK DMS           +  A  RD  SGGVA +  +   G +   + GD + + H
Sbjct:   42 YVSSKTINKLIQVHDRIFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEE-LQAGFITAGWDRKKGPQVYTV-ALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFAKNALALAMGRDNVSGGVAHLVVITEEGVEHVVIPGDKLPKFH 215          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 3
Query:    6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLS 494
            + +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLAN+L   R +      ++ G+DE  P LY VD  GG  +    + GSG  +AY VLDS Y+ D+ +          I  A  RD  SG    V  +   G+++LS
Sbjct:   36 VYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGGITEDKYVAAGSGMEFAYSVLDSEYREDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRELS 197          
BLAST of FC929025 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 3
Query:    6 ISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYKFDMSIXXXXXXXXXXIYHATFRDAASGGVASVYYVGPNGWKKLSGDDV 506
            I +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLANI+   +        ++ G+DE  P LY VD  GG  +    + GSG  +AY +LDS YK ++++          I  A  RD  SG    V  +   G+K+LS  ++
Sbjct:   36 IYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKELSDSEL 201          
The following BLAST results are available for this feature:
BLAST of FC929025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PSMB_METTE1.109e-2032.54Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_METTH3.019e-1832.74Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_ARCFU1.657e-1631.58Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]
PSMB_THEAC9.090e-1530.18Proteasome subunit beta OS=Thermoplasma acidophilu... [more]
PSMB_METJA2.025e-1430.81Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PB6LB_SALSA1.111e-1230.68Proteasome subunit beta type-6-B like protein OS=S... [more]
PB6LA_SALSA1.111e-1230.68Proteasome subunit beta type-6-A like protein OS=S... [more]
PSMB_PYRAB5.514e-1230.67Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_PYRHO1.604e-1129.94Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DB05RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929025 ID=FC929025; Name=FC929025; organism=Citrus clementina; type=EST; length=796bp
GCTATATCTCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTAC
ATGCTTGGCACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAG
AAATCTGGGCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAA
TTTCAGTTACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTAT
CGTGGAATGGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGAC
TGGTCCTGGGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGAA
CACGGTTCTCTGTGGGATCAGGTTCACCATATGCTTATGGTGTATTGGAC
AGCGGGTACAAGTTTGACATGTCTATTGAAGAAGCTGCGGAGTTGGCTAG
AAGAGCTATTTATCATGCAACATTCAGAGATGCAGCCAGTGGTGGTGTTG
CAAGCGTTTATTATGTGGGACCAAATGGATGGAAGAAGCTGTCTGGTGAT
GATGTTGGAGAGCTTCACTACCATTATTATCCAGTCACGCCCAGTACGGT
GGAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTCTTGCTCAAT
TTGGACCAGGTTTGAGATATTCCTCATATTCACAGATCCAGTGGAGGACT
TTACGGATTTGCTTCTGAACTTTGTCAATGTACCTTGGGTTGATCCCGGC
GATGACTTGTGAATTCAACCTAGTTAAGTTGATGCTTTAAGAACCCTGCA
TTTTCTTTTGGTATTTTCATTATGACAAGTACAGTTCTATTTTCTA
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