FC929026

Overview
NameFC929026
Unique NameFC929026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig155 contig Ccv1_Contig155:172..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929026 vs. ExPASy Swiss-Prot
Match: CFI2_VITVI (Chalcone--flavonone isomerase 2 OS=Vitis vinifera GN=CHI2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 2
Query:   17 IKFTAIGVYLDPEILSHLQ-KWKGKQGSSLAQHDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLKGAVRDRLAETDKYEE*EESALEKIVEFFQSKYF-KNDSVIAYHFPATSPTAEIVFTNEGKEDSKIKVENANVVEMIKKWYLGGARGVSP 478
            +KFTAIGVYL+   +  L  KWKGK    LA   DFF  +V+ P EKF ++  I  + G QY  ++             Y + E  A+EK  E  + + F   +S++  H P  + T          E     +EN  + E + +  + G  GVSP
Sbjct:   47 VKFTAIGVYLESSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQYSDKVSENCVAFWKSVGIYTDAEAKAIEKFNEVLKDETFPPGNSILFTHSPLGALTMSFSKDGSLPEVGNAVIENKLLTEAVLESII-GKHGVSP 201          
BLAST of FC929026 vs. ExPASy Swiss-Prot
Match: CFI_IPOBA (Chalcone--flavonone isomerase OS=Ipomoea batatas GN=CHI PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 2
Query:   17 IKFTAIGVYLDPEILSHLQ-KWKGKQGSSLAQHDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLKGAVRDRLAETDKYEE*EESALEKIVEFFQSKYFKNDSVIAYHFPATSP--TAEIVFTNEGK--EDSKIKVENANVVEMIKKWYLGGARGVSP 478
            +KFTAIGVYL+ + +  L  KW GK    L     FF  +V+ P EK  RI +I  + G QY  ++             Y + E  A+EK  + F  + F   + I   F   SP  +  I F+ EG   E +   +EN  + E + +  + G++GVSP
Sbjct:   47 VKFTAIGVYLEADAVPSLAVKWNGKSAEELTDSVQFFRDIVTGPFEKLTRITMILPLSGKQYSEKVSENCVAFWKAAGMYGDAESKAIEKFNDVFSDQMFPPGASI---FFTQSPHGSLTISFSKEGSMPEIASAVIENKPLSEAVLESII-GSKGVSP 201          
BLAST of FC929026 vs. ExPASy Swiss-Prot
Match: CFI1_VITVI (Chalcone--flavonone isomerase 1 OS=Vitis vinifera GN=CHI1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 49/156 (31.41%), Postives = 72/156 (46.15%), Query Frame = 2
Query:   17 IKFTAIGVYLDPEILSHLQ-KWKGKQGSSLAQHDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLKGAVRDRLAETDKYEE*EESALEKIVEFFQSKYF-KNDSVIAYHFPATSPTAEIVFTNEGKEDSKIKVENANVVEMIKKWYLGGARGVSP 478
            +KFTAIGVYL+   +  L  KWKGK    LA   DFF  +V+ P EKF ++  I  + G QY  ++             Y + E  A+EK  E  + + F   +S++  H P  + T          E     +EN  + E + +  + G  GVSP
Sbjct:   47 VKFTAIGVYLENSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQYSDKVSENCVAFWKSVGIYTDAEAKAIEKFNEVLKDETFPPGNSILFTHSPLGALTMSFSKDGSLPEVGNAVIENKLLTEAVLESII-GKHGVSP 201          
The following BLAST results are available for this feature:
BLAST of FC929026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CFI2_VITVI4.910e-1131.41Chalcone--flavonone isomerase 2 OS=Vitis vinifera ... [more]
CFI_IPOBA6.413e-1132.08Chalcone--flavonone isomerase OS=Ipomoea batatas G... [more]
CFI1_VITVI6.413e-1131.41Chalcone--flavonone isomerase 1 OS=Vitis vinifera ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DB07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929026 ID=FC929026; Name=FC929026; organism=Citrus clementina; type=EST; length=697bp
GATACACTTTCTCCAAATCAAGTTCACGGCAATTGGAGTCTACTTGGATC
CTGAAATTTTGAGTCACTTGCAAAAGTGGAAGGGCAAACAGGGAAGTTCC
CTTGCACAACATGATGACTTCTTTGATGCTCTTGTCTCTGCTCCAGTAGA
GAAATTTTTTAGAATTGTTGTGATCAAGGAGATCAAGGGGTCACAATATG
GGGTTCAGTTAAAAGGTGCGGTGAGGGACAGATTGGCCGAAACTGACAAA
TATGAAGAATAGGAAGAATCTGCCCTTGAGAAAATCGTTGAATTCTTCCA
ATCCAAGTATTTTAAAAATGACTCTGTGATTGCTTATCATTTTCCAGCAA
CATCCCCTACTGCAGAGATAGTGTTTACAAATGAAGGAAAGGAGGACTCA
AAAATCAAAGTGGAGAATGCGAATGTGGTTGAGATGATCAAGAAATGGTA
CTTGGGTGGAGCAAGGGGAGTGTCTCCTACAACAACATCATCTCTAGCCA
ATACTCTCTCAGCTGAGTTATCAAAATGAAGCAGCTCTGCGCTTTCTAAT
AAAAGTGCTTCTTCACTTGGGTTTTGGAATTGCTGTACATTTGTGGAATT
TGAATGACGTGTTTACCCCGCATCCATGCTTCTATTTTAATGAAAATTTG
CTTTGCTAAAGTCCTTCACGAAAAAAAAAAAAAAAAAAAAAAAAAAA
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