FC929037

Overview
NameFC929037
Unique NameFC929037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.129e-37
Identity = 79/153 (51.63%), Postives = 93/153 (60.78%), Query Frame = 3
Query:  363 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSGR 821
            VFFD+  GG    +IV +L+ DV P+TA NFR L TG +G G       YKGS FHRVI  FM Q            +SIYG  FADENF  KHT P +LSMANAGP TNGSQFF+      WLDGKHVVF  VV+G D ++  +K  S  G+
Sbjct:    4 VFFDVQFGGDAPKKIVFKLYDDVVPKTAANFRELATGSRGFG-------YKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFDTLELFKKNSSQQGK 149          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPID_USTMA (Peptidyl-prolyl cis-trans isomerase D OS=Ustilago maydis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.656e-36
Identity = 80/158 (50.63%), Postives = 96/158 (60.76%), Query Frame = 3
Query:  345 KMPNPKVFFDMTVGGQPAGR-----IVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            K  NP V+ D+  G  PA R     IV+EL+AD  PRTAENFR LCT    +  +G+PL ++ S FHRVIP FM Q            ESIYG  F DE+   KH  P +LSMANAG  TNGSQFF+ T  T  LDGKHVVF  V++G  VV+ +E V
Sbjct:    9 KPGNPIVYLDLAFGSSPASRPGSNRIVLELYADRVPRTAENFRVLCTNTSKLASTGQPLSFRNSIFHRVIPKFMIQGGDFTRADGTGGESIYGEKFQDEDLTGKHDVPFLLSMANAGANTNGSQFFITTVPTPHLDGKHVVFGRVLKGKGVVRRVESV 166          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            P+  FD+ +  +P GRI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG HVVF  V+ G +V++ IE +
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENL 156          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 74/150 (49.33%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            P+  FD+ +  +P GRI+ +LF+D+ P+T +NF  LC+GEKG+GK+ GK L YKGS+FHRV+  FM Q            ESIYG  F DENF+ KH    +LSMAN G  TNGSQFF+ T     LDG HVVF  V+ G +V++ IE +
Sbjct:    7 PQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENL 156          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.917e-36
Identity = 78/150 (52.00%), Postives = 95/150 (63.33%), Query Frame = 3
Query:  354 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            N + FFD+++ G+PAGRIV  L+    PRT ENFRA CTGE G   +G    Y+GS FHRVI GFM Q             SIYG  F DEN   KH  P +LSMAN GP TNGSQFF+ + +   LDGKH VF  V++G++VVKAIE +
Sbjct:    8 NKRAFFDISINGEPAGRIVFSLWNHCCPRTVENFRAFCTGELG-KMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENL 156          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.318e-35
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSX-FADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEK--VGSSS 815
            P VF D+ + G+  GRI + LF+ + P+TAENFR  CTGE  +G + KP+ YK S+FHR+I GFM Q             +I+ S  F DENF  KH  PG+LSMANAG  +NG QFF+ T   ++LDGKHVVF  V+EG D+VK IE   VG++S
Sbjct:    5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGET-LGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANS 159          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.997e-33
Identity = 79/155 (50.97%), Postives = 94/155 (60.65%), Query Frame = 3
Query:  360 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVV-EGMDVVKAIEKVGSSSGR 821
            K F D+ + G+ AGRIV+EL  DV P+T +NF         IG   K   YKGS+FHRVI  FM Q             SIYG  F DENF  KH   G++SMANAGP TNGSQFF+ T KTEWLDG+HVVF  +  +    V+AIE +GSS GR
Sbjct:   24 KAFMDIEIDGESAGRIVLELRGDVVPKTVKNF---------IGLFDK---YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKHDR-GVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKITNDSWPTVQAIEALGSSGGR 165          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.044e-32
Identity = 71/149 (47.65%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  360 KVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            +VF DM +  +P GRI ++LF    P+T ENFRALCTGE G+  + K  LHYKG+  HRV+  FM Q             SIYG  F DE FV KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVF  V++G +VV  ++ +
Sbjct:    7 RVFLDMALDEKPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNL 155          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.364e-32
Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  393 PAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            PAGR+  ELF+D+ PRT+ENFR LCTGE     +  P  YK S FHR+I  FMCQ             SIYG  F DENF  KH   G+LSMAN+GPGTNG QFF+      +LDGKHVVF  VV+G+  ++ +E V
Sbjct:    2 PAGRLKCELFSDIVPRTSENFRQLCTGE--FRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDENFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENV 136          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.184e-32
Identity = 72/146 (49.32%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  366 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            +F +++ G+    I  ELF +V P+T +NF +LC G +   K G+ L YKGS FHRVI  FM Q            ESIYG  F DENF  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVF  V++G   V+ IE +
Sbjct:    6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNGFE---KDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTVRTIENL 148          
The following BLAST results are available for this feature:
BLAST of FC929037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PPIA_PARPR9.129e-3751.63Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
PPID_USTMA2.656e-3650.63Peptidyl-prolyl cis-trans isomerase D OS=Ustilago ... [more]
NKTR_MOUSE5.917e-3649.33NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN5.917e-3649.33NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
CYP8_CAEEL5.917e-3652.00Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIH_SCHPO1.318e-3550.00Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
PPIA_NEOCA7.997e-3350.97Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
CYP9_CAEBR1.044e-3247.65Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIH_USTMA1.364e-3251.82Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]
PPID_SCHPO5.184e-3249.3240 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929037 ID=FC929037; Name=FC929037; organism=Citrus clementina; type=EST; length=830bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTTCGGTCAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAA
GTGGGGTCCAGCTCCGGAAGGACCACAAGC
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