FC929037

Overview
NameFC929037
Unique NameFC929037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 50/139 (35.97%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMD-VVKAIEKVGS 809
            G + +EL  +  P+   NF  L   EKG        +Y+  +FHR I  FM Q             SI+G  F DE      H+  GI+SMAN G  TN SQFF+       LD KH +F  V+EG D  + A+E V +
Sbjct:  339 GPLTLELLPEFAPKAVWNFLRL--SEKG--------YYRDVAFHRSIRNFMIQGGDPSGTGRGG-SSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVAT 466          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: SDC10_DANRE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Danio rerio GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 45/124 (36.29%), Postives = 63/124 (50.81%), Query Frame = 3
Query:  396 AGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSV 764
            AG I +EL++  TP+   NF  LC             +Y G+ FHR++P F+ Q            ESIYG  F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +F  V
Sbjct:   21 AGDIDIELWSKETPKACRNFVQLCMEG----------YYDGTIFHRMVPEFIVQGGDPTGTGTGG-ESIYGRPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSV 764
            Q    N KV    T     AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +F  V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSV 764
            Q    N KV    T     AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +F  V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 49/143 (34.27%), Postives = 67/143 (46.85%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSV 764
            Q    N KV    T     AG I +EL++   P+   NF  LC             +Y  + FHRV+PGF+ Q            ESIYG+ F DE   + +    G+++MANAG   NGSQFF    + + L+ KH +F  V
Sbjct:    7 QEPPTNGKVLLKTT-----AGDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGTGSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV 133          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: BPPI_STRP6 (Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase OS=Streptococcus pyogenes serotype M6 GN=M6_Spy1377 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 44/104 (42.31%), Postives = 54/104 (51.92%), Query Frame = 3
Query:  399 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFV 710
            G + + LF D  P+T  NF        G+ K G   +Y G  FHR+IP FM Q            +SIYG  F DE   + +   G LSMANAGP TNGSQFF+
Sbjct:  297 GDMTLVLFPDHAPKTVANFL-------GLAKEG---YYDGIIFHRIIPEFMIQGGDPTGTGMGG-QSIYGESFEDEFSDELYNLRGALSMANAGPNTNGSQFFI 389          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 47/143 (32.87%), Postives = 66/143 (46.15%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVK-KHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSV 764
            Q    N KV    T     AG I +EL++   P+   NF  LC             +Y  + FHRV+P F+ Q            ES++G  F DE   + +    G+++MANAGP  NGSQFF    + + L+ KH +F  V
Sbjct:    7 QEPPSNGKVLLKTT-----AGEIDIELWSKEAPKACRNFVQLCLEG----------YYDNTIFHRVVPEFIIQGGDPTGTGTGG-ESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKV 133          
The following BLAST results are available for this feature:
BLAST of FC929037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
PPIL2_NEUCR2.048e-1235.97Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
SDC10_DANRE3.493e-1236.29Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Da... [more]
SDC10_PONAB7.782e-1234.27Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA7.782e-1234.27Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN7.782e-1234.27Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
BPPI_STRP61.327e-1142.31Putative bifunctional phosphatase/peptidyl-prolyl ... [more]
SDC10_XENLA3.862e-1132.87Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929037 ID=FC929037; Name=FC929037; organism=Citrus clementina; type=EST; length=830bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTTCGGTCAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAA
GTGGGGTCCAGCTCCGGAAGGACCACAAGC
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