FC929037

Overview
NameFC929037
Unique NameFC929037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length830
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:11..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.650e-44
Identity = 93/163 (57.06%), Postives = 112/163 (68.71%), Query Frame = 3
Query:  339 QSKMPNPKVFFDMTVG---GQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            QSK+ + KV+FD++VG   G+ AGRIV+ L+ D  P+T ENFRALCTGEKG G       YKGS+FHRVI  FM Q            +S+YG  F DENF   H GPG+LSMANAGP TNGSQFF+CT KT WLDG+HVVF  V+EGM+VVK IE+  +  G
Sbjct:   85 QSKITH-KVYFDISVGNPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFG-------YKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDENFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRG 239          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 90/153 (58.82%), Postives = 107/153 (69.93%), Query Frame = 3
Query:  348 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIG-KSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKV 803
            M   K F D+++GG+  GRIV+EL+ DV P+TAENFR LCTGEKG+G  +G PLHYKG+ FHRVI GFM Q            ESIYG  F DENF  KH   G+LSMAN+GP TNGSQFF+ T +T  LDGKHVVF  V +GM VV++IE V
Sbjct:    1 MGRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHV 153          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.520e-44
Identity = 87/155 (56.13%), Postives = 106/155 (68.39%), Query Frame = 3
Query:  357 PKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSGR 821
            P+VFFD+ +G +  GRI +EL   + P+TAENFRALCTGEKG+GK GKPLH+KGS FHRVI  FM Q            ESIYG  F DENF  KH  P +LSMAN+GPGTNGSQFF+ T  T  LDGKHVVF  V+ G  VV+ +E + + + +
Sbjct:    8 PRVFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADK 160          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.904e-44
Identity = 87/153 (56.86%), Postives = 105/153 (68.63%), Query Frame = 3
Query:  345 KMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKS-GKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEK 800
            K+  PKVFFD++  G+P GR+V EL+ DV P+TAENFRALCTGEKG  +S GK LHYKGS FHR+I  FMCQ            ESIYG  F DENF   H  P +LSMANAG  TNGSQFF+ T  T  L+GKHVVF  V++G  +V+ +E+
Sbjct:    4 KLNRPKVFFDISADGKPKGRVVFELYNDVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDENFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLER 156          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIA2_RHIOR (Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus oryzae GN=cyp1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.710e-44
Identity = 87/152 (57.24%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  363 VFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            V+FD+++ G+PAGRI  +LF DV P+TA+NFRALCTGE+G G       YKGS FHRVIP FM Q            +SIYG  FADENF  KH+ PG+LSMANAGP TNGSQFF+ T    WLDG HVVF  V + M++V  IE +GS+SG
Sbjct:    3 VYFDISIDGKPAGRIEFQLFEDVVPKTAKNFRALCTGEQGFG-------YKGSKFHRVIPQFMLQGGDFTRGDGTGGKSIYGEKFADENFKLKHSEPGLLSMANAGPNTNGSQFFITTVPCSWLDGAHVVFGKVTKNMELVSKIESLGSASG 147          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.007e-43
Identity = 94/174 (54.02%), Postives = 114/174 (65.52%), Query Frame = 3
Query:  303 VRV*FVFFSPINQSKMP--NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            V + FV    ++ +K P    KV+FD+  GG+P GRIVM L+    P+TAENFRAL TG+   G+      Y+GSSFHR+I  FM Q            +SIYGS F DENF  KHTGPG+LSMANAG  TNGSQFF+CT KT WLD +HVVF  V+EGMDVV A+E V +S G
Sbjct:   25 VAICFVLSPGVDAAKGPVITNKVYFDIEHGGKPLGRIVMGLYGKTVPKTAENFRALATGKNSDGED-LGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDENFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRG 197          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: RBP2_HUMAN (E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.243e-43
Identity = 91/159 (57.23%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            SK  NP VFFD+   G+P GRI MELF+++ PRTAENFRALCTGEKG G       +K S FHRVIP F+CQ            +SIYG  F DENF  KHTGPG+LSMAN G  TN SQF +   K E LD KHVVF  V +GMD VK IE  GS  G
Sbjct: 3059 SKETNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIPDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGMDTVKKIESFGSPKG 3210          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.930e-43
Identity = 89/159 (55.97%), Postives = 104/159 (65.41%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            SK  NP VFFD+   G+P GRI+MELF+++ P+TAENFRALCTGEKG G       +K S FHRV+P F+CQ            +SIYG  F DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVF  V +GMD V+ IE  GS  G
Sbjct: 2888 SKDTNPVVFFDVCADGEPLGRIIMELFSNIVPQTAENFRALCTGEKGFG-------FKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTVRKIESFGSPKG 3039          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: PPIH_GIBZE (Peptidyl-prolyl cis-trans isomerase H OS=Gibberella zeae GN=CYP3 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.998e-43
Identity = 90/156 (57.69%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  342 SKMP---NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYG-SXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIE 797
            +K+P   NP VFFD+T+GG+P GRI  ELF DV P+TAENFR  CTGE      G+P  YKGS FHR+IP FMCQ              I+G   F DENF  KH  PG+LSMANAGP TNGSQFF+ T  T +LD KHVVF  V EGMDVVK +E
Sbjct:    4 TKLPESGNPLVFFDITIGGEPLGRITFELFKDVVPKTAENFRQFCTGESKT-PVGRPQGYKGSKFHRIIPNFMCQGGDFLNGDGTGSTCIWGFKSFEDENFTLKHDQPGLLSMANAGPNTNGSQFFITTVPTPFLDNKHVVFGKVFEGMDVVKKME 158          
BLAST of FC929037 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 90/159 (56.60%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  342 SKMPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSXFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFRSVVEGMDVVKAIEKVGSSSG 818
            SK  NP VFFD+    +P GRI MELF+++ P+TAENFRALCTGEKG G       +K S FHRVIP F+CQ             SIYG  F DENF  KHTGPG+LSMAN G  TN SQFF+   K E LD KHVVF  V +GMD VK IE  GS  G
Sbjct:  920 SKETNPVVFFDICADDEPLGRITMELFSNIVPKTAENFRALCTGEKGFG-------FKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTVKKIESFGSPKG 1071          
The following BLAST results are available for this feature:
BLAST of FC929037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
CP20B_ARATH2.650e-4457.06Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
CYP40_ARATH3.461e-4458.82Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPID_ASPOR4.520e-4456.13Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_DEBHA5.904e-4456.86Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPIA2_RHIOR7.710e-4457.24Peptidyl-prolyl cis-trans isomerase A2 OS=Rhizopus... [more]
PPIB_CRYNE1.007e-4354.02Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
RBP2_HUMAN2.243e-4357.23E3 SUMO-protein ligase RANBP2 OS=Homo sapiens GN=R... [more]
RBP2_MOUSE2.930e-4355.97E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]
PPIH_GIBZE4.998e-4357.69Peptidyl-prolyl cis-trans isomerase H OS=Gibberell... [more]
RBP2_BOVIN1.454e-4256.60E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC07RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929037 ID=FC929037; Name=FC929037; organism=Citrus clementina; type=EST; length=830bp
GGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCATTAGCAACCAC
TTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGCCCCACGTAGT
CTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTTATTAGTTTCC
ACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACATCGTTGTTCCG
GGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGGATGTCCATGC
TAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCACGAGGATCAG
AAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCAATCAAAAATG
CCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTCAGCCCGCCGG
CAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGAACCGCCGAGA
ACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAG
CCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCCCCGGATTCAT
GTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGAGGCGAATCAA
TCTACGGCTCANAATTCGCCGATGAGAACTTCGTGAAGAAGCACACCGGC
CCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCAACGGATCTCA
GTTCTTCGTCTGTACGGCCAAGACCGAGTGGCTCGATGGGAAGCACGTTG
TGTTTCGGTCAGTCGTCGAAGGAATGGACGTCGTCAAGGCCATCGAGAAA
GTGGGGTCCAGCTCCGGAAGGACCACAAGC
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