FC929040

Overview
NameFC929040
Unique NameFC929040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929040_ssr137 microsatellite FC929040_ssr137:137..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267 contig Ccv1_Contig9267:2..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.917e-58
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            ++ QCLGAICG G VK FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  142 IIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLP 220          

HSP 2 Score: 121.324 bits (303), Expect = 5.917e-58
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA+IYN++ AW D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  220 PIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 290          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.918e-58
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            ++ QCLGA+CG G VK FQ+  Y   GGGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  139 IIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLP 217          

HSP 2 Score: 121.709 bits (304), Expect = 5.918e-58
Identity = 54/71 (76.06%), Postives = 62/71 (87.32%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA+IYN++ AW+D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  217 PIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 287          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.229e-57
Identity = 60/79 (75.95%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            MV QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  138 MVMQCLGAICGAGVVKGFQEGLYMGAGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLP 216          

HSP 2 Score: 117.857 bits (294), Expect = 2.229e-57
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA++YN+  AW+D WIFWVGPFIGA +AA YH  I+RA   K+
Sbjct:  216 PIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKS 286          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 4.940e-57
Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = -3
Query:  403 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGSFRSNA 639
            PIGFAVF+VHLATIPITGTGINPARS GAAV+YN+  AW D WIFWVGP IGAF+AA YH+ +LR  A KAL SFRS +
Sbjct:  209 PIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKALSSFRSTS 287          

HSP 2 Score: 113.235 bits (282), Expect = 4.940e-57
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            +VAQCLGAI G G VK   K  Y+  GGGAN ++DGY+    LGAEI+GTF+LVYTVFSATDPKR+ARDS +PVL PLP
Sbjct:  131 VVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLP 209          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.940e-57
Identity = 60/79 (75.95%), Postives = 63/79 (79.75%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            MV QCLGAICG G VK F    Y R GGGAN +  GY KG GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  137 MVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLP 215          

HSP 2 Score: 117.857 bits (294), Expect = 4.940e-57
Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = -3
Query:  442 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA+IYN E AW+D WIFWVGP IGA +AA YHQ I+RA
Sbjct:  215 PIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRA 280          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 3.162e-56
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            M  QCLGAICG G VK FQ+  Y   GGGAN +  GY KG GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLP
Sbjct:  138 MAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLP 216          

HSP 2 Score: 116.316 bits (290), Expect = 3.162e-56
Identity = 51/71 (71.83%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA++YN+  AW D WIFWVGPFIGA +AA YH  ++RA   K+
Sbjct:  216 PIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKS 286          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.201e-54
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA+++NK+  W+D WIFWVGPFIGA +AA YHQ ++RA   K+
Sbjct:  218 PIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKS 288          

HSP 2 Score: 114.39 bits (285), Expect = 2.201e-54
Identity = 57/80 (71.25%), Postives = 63/80 (78.75%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQ-KSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            MV Q LGAICG G VK F+ K  +    GGAN +A GY KG GLGAEI+GTF+LVYTVFSATD KRSARDSHVP+LAPLP
Sbjct:  139 MVMQVLGAICGAGVVKGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLP 218          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.869e-54
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            +V QCLGA+CG G VKAF  + Y   GGGAN ++ GY KG GLGAE++GTFVLVYTVFSATD KR+ARDSHVP LAPLP
Sbjct:  144 VVMQCLGAVCGAGVVKAFGSALYESAGGGANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLP 222          

HSP 2 Score: 110.923 bits (276), Expect = 2.869e-54
Identity = 50/71 (70.42%), Postives = 56/71 (78.87%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLATIPITGTGINPARS GAA+IY+    W   WIFWVGPF GA +AA YHQ +LRA   K+
Sbjct:  222 PIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFKS 292          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 4.877e-54
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = -2
Query:  638 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 874
            ++ QCLGAICG G VK FQ+  Y   GG  N +A GY KG GLGAEI+GTF+LVYTVFSATD KR ARDSHVP+LAPLP
Sbjct:  137 IIMQCLGAICGRGVVKGFQQGLYMGNGGRRNVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLP 215          

HSP 2 Score: 115.161 bits (287), Expect = 4.877e-54
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = -3
Query:  427 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKA 639
            PIGFAVF+VHLAT+ ITGTGINPARS GAAVIYN+  AW D WIFWVGPFIGA +AA YHQ I+RA   K+
Sbjct:  215 PIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKS 285          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.867e-50
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  638 VAQCLGAICGCGFVKAFQKS-YYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLP 871
            +AQC+GA+CG G  +A      Y R+GGGANELA GY+ G G+ AE++GTFVLVYTVFSATDPKR ARDSHVPVLAPLP
Sbjct:  119 MAQCVGAVCGAGLARAMHGGGQYARHGGGANELAAGYSAGAGVVAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLP 197          

HSP 2 Score: 101.679 bits (252), Expect = 8.867e-50
Identity = 50/76 (65.79%), Postives = 53/76 (69.74%), Query Frame = -3
Query:  418 PIGFAVFMVHLATIPITGTGINPARSFGAAVIYN--KEKAWDDQWIFWVGPFIGAFVAAFYHQYILRAAAIKALGS 639
            PIG AV +VHLATIPITGTGINPARS G A++      KAW   WIFWVGPF GA  A  YH YILR AA KA  S
Sbjct:  197 PIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFAS 272          
The following BLAST results are available for this feature:
BLAST of FC929040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PIP13_MAIZE5.917e-5872.15Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_MAIZE5.918e-5870.89Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP15_MAIZE2.229e-5775.95Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP27_ORYSJ4.940e-5774.68Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
PIP1_SOLLC4.940e-5775.95Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ORYSJ3.162e-5673.42Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP2_PEA2.201e-5471.83Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP16_MAIZE2.869e-5470.89Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP11_MAIZE4.877e-5469.62Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP28_ORYSJ8.867e-5069.62Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC10RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929040 ID=FC929040; Name=FC929040; organism=Citrus clementina; type=EST; length=875bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGCC
AAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGA
GAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTC
CGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATAC
CTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAGAT
TGCACCCAAGCACTGTGCTACCATG
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