FC929040 | Citrus Genome Database

Overview


Name	FC929040
Unique Name	FC929040
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	875

Libraries


Library Name	Type
PhII-IIIV1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC929040_ssr137	microsatellite	FC929040_ssr137:137..148.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9267	contig	Ccv1_Contig9267:2..876.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.975e-21
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IGF+V + HL  I  TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  174 IGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233

HSP 2 Score: 49.6766 bits (117), Expect = 1.975e-21
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = -2

Query:  680 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 874
            ++AQC+GAI     +     S  +    G N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  100 IIAQCVGAIVATAILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.570e-21
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IG +V + HL  I  TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  172 IGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 53.9138 bits (128), Expect = 2.570e-21
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = -2

Query:  653 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 874
            ++AQC+GAI     +     S       G N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:   98 IIAQCVGAIVATAILSGITSSLTGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 3.343e-21
Identity = 33/63 (52.38%), Postives = 42/63 (66.67%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IG +V + HL  I  TG GINPARSFG+AVI +    + + WIFWVGPFIG  +A   + +IL
Sbjct:  172 IGLSVALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 53.5286 bits (127), Expect = 3.343e-21
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = -2

Query:  653 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 874
            ++AQC+GAI     +     S       G N+LADG N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:   98 IIAQCVGAIVATAILSGITSSLPGN-SLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 4.348e-21
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IGF+V + HL  I  TG GINPARSFG++VI +    + D WIFWVGPFIGA +A   + +IL
Sbjct:  175 IGFSVALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 234

HSP 2 Score: 48.521 bits (114), Expect = 4.348e-21
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = -2

Query:  680 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 874
            ++AQC+GAI     +     S  +    G N LA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  100 IIAQCVGAIVATVILSGITSSLPDN-SLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.348e-21
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IG +V + HL  I  TG GINPARSFG++VI +  K   D WIFWVGPFIG  +A   + +IL
Sbjct:  174 IGLSVALGHLLAIDYTGCGINPARSFGSSVITHNFK---DHWIFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 51.9878 bits (123), Expect = 4.348e-21
Identity = 29/65 (44.62%), Postives = 36/65 (55.38%), Query Frame = -2

Query:  680 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKR 874
            ++AQC+GAI     +     S  +    G NELA G N G GLG EIIGT  LV  V + TD +R
Sbjct:  100 IIAQCVGAIVATAILSGITSSLPDN-SLGRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR 163

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 9.570e-21
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IGF+V + HL  I  TG GINPARSFG+AVI +    + D W+FWVGPFIG  +A   + +IL
Sbjct:  174 IGFSVALGHLLAIDYTGCGINPARSFGSAVITHN---FQDHWVFWVGPFIGGALAVLIYDFIL 233

HSP 2 Score: 48.1358 bits (113), Expect = 9.570e-21
Identity = 28/74 (37.84%), Postives = 36/74 (48.65%), Query Frame = -2

Query:  653 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 874
            ++AQC+GAI     +     S       G N LA G + G GLG EIIGT  LV  V + TD +R       P+
Sbjct:  100 IIAQCVGAIVATAILSGITSSLPGN-SLGLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 172

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 1.620e-20
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IG +V + HL  I  TG GINPARSFG+AV+    + + + WIFWVGPFIG  +A   + +IL
Sbjct:  172 IGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231

HSP 2 Score: 51.9878 bits (123), Expect = 1.620e-20
Identity = 29/74 (39.19%), Postives = 38/74 (51.35%), Query Frame = -2

Query:  653 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 874
            ++AQC+GAI     +     S  +    G N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:   98 IIAQCVGAIVATAILSGITSSLVDN-SLGRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 2.107e-20
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = -3

Query:  448 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 636
            IG +V + HL  I  TG GINPARSFG+AV+    + + + WIFWVGPFIG+ +A   + +IL
Sbjct:  172 IGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231

HSP 2 Score: 51.2174 bits (121), Expect = 2.107e-20
Identity = 29/74 (39.19%), Postives = 37/74 (50.00%), Query Frame = -2

Query:  653 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPV 874
            ++AQC+GAI     +     S       G N+LA G N G GLG EIIGT  LV  V + TD +R       P+
Sbjct:   98 IIAQCVGAIVASAILSGITSSLLEN-SLGRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPL 170

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.091e-18
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = -3

Query:  451 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 636
            IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  196 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254

HSP 2 Score: 43.5134 bits (101), Expect = 3.091e-18
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = -2

Query:  677 MVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 874
            + AQCLGAI G G +  +  +  N  GG G   +      G GL  E+I TF LV+T+F++ D KR+
Sbjct:  122 ITAQCLGAIIGAGIL--YLVTPPNVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 186

[Close]

BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.149e-17
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = -3

Query:  451 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 636
            IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  193 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 251

HSP 2 Score: 41.5874 bits (96), Expect = 1.149e-17
Identity = 26/67 (38.81%), Postives = 38/67 (56.72%), Query Frame = -2

Query:  677 MVAQCLGAICGCGFVKAFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRS 874
            + AQCLGAI G G +  +  +  +  GG G   +      G GL  E+I TF LV+T+F++ D KR+
Sbjct:  119 ITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183

The following BLAST results are available for this feature:

BLAST of FC929040 vs. ExPASy Swiss-Prot

BLAST of FC929040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73


Match Name	E-value	Identity	Description
AQP1_BOVIN	1.975e-21	55.56	Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3	[more]
AQP1_HUMAN	2.570e-21	52.38	Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3	[more]
AQP1_PONAB	3.343e-21	52.38	Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3	[more]
AQP1_SHEEP	4.348e-21	55.56	Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3	[more]
AQP1_CANFA	4.348e-21	53.97	Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3	[more]
AQP1_PIG	9.570e-21	53.97	Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3	[more]
AQP1_MOUSE	1.620e-20	50.79	Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3	[more]
AQP1_RAT	2.107e-20	50.79	Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4	[more]
AQP4_NOTAL	3.091e-18	50.00	Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1	[more]
AQP4_RAT	1.149e-17	50.00	Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAH1DC10RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC10, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC929040 ID=FC929040; Name=FC929040; organism=Citrus clementina; type=EST; length=875bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGCC
AAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGA
GAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTC
CGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATAC
CTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAGAT
TGCACCCAAGCACTGTGCTACCATG