FC929040

Overview
NameFC929040
Unique NameFC929040
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 3.512e-11
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = -3
Query:  475 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFV 636
            IG A+ ++HL +IP+T T +NPARS G A ++    A    W+FWV P IGA +
Sbjct:  166 IGLALTLIHLISIPVTNTSVNPARSTGPA-LFVGGWALQQLWLFWVAPLIGAAI 218          

HSP 2 Score: 32.7278 bits (73), Expect = 3.512e-11
Identity = 20/74 (27.03%), Postives = 33/74 (44.59%), Query Frame = -2
Query:  674 MVAQCLGAICGCGFV-------KAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSA 874
            ++AQ +GAI   G +         F+ S      G A+    GY  G G  +E++ T + +  +  ATD +  A
Sbjct:   86 VIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPA 159          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 48.521 bits (114), Expect = 4.545e-11
Identity = 25/59 (42.37%), Postives = 33/59 (55.93%), Query Frame = -3
Query:  460 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 636
            IGF V    LA  P +G  +NPARSFG AV+      +   WI+WVGP +G  +A   +
Sbjct:  177 IGFIVGANILAAGPFSGGSMNPARSFGPAVVSGD---FSQIWIYWVGPLVGGALAGLIY 232          

HSP 2 Score: 38.1206 bits (87), Expect = 4.545e-11
Identity = 25/74 (33.78%), Postives = 38/74 (51.35%), Query Frame = -2
Query:  653 VAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPV 871
            +AQCLG+I  C  +        N      + +A G     G+  EI+ TF LVYTV+ +A DPK+ +  +  P+
Sbjct:  106 IAQCLGSIVACLLLVFVT----NGESVPTHGVAAGLGAIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPI 175          
BLAST of FC929040 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 5.900e-11
Identity = 23/62 (37.10%), Postives = 33/62 (53.23%), Query Frame = -3
Query:  451 IGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 636
            IGF V    L     TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:  178 IGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          

HSP 2 Score: 38.1206 bits (87), Expect = 5.900e-11
Identity = 26/79 (32.91%), Postives = 42/79 (53.16%), Query Frame = -2
Query:  641 MVAQCLGAICGCGFVKAFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPL 874
            ++AQ LG+I     +     S    +G     L++G   G  L  EI+ TF LVYTV+ +A DPK+     ++ ++AP+
Sbjct:  107 IIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPI 176          
The following BLAST results are available for this feature:
BLAST of FC929040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
AQPZ_PSEPK3.512e-1146.30Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP22_ARATH4.545e-1142.37Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP1_MEDTR5.900e-1137.10Probable aquaporin TIP-type OS=Medicago truncatula... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DC10RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DC10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929040 ID=FC929040; Name=FC929040; organism=Citrus clementina; type=EST; length=875bp
TTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTAA
TTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAGG
ATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACTT
ATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCCT
TACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTAC
AATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAGC
TTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGAT
CATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGCT
TAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGAG
AATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCAA
CCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCACA
GCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGAT
GGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGGAGTGGTGCC
AAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGA
GAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTC
CGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATAC
CTGTTGTAGTATGATTTTTGGAAAGCCTTCACAAACCCACAACCACAGAT
TGCACCCAAGCACTGTGCTACCATG
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