FC929045

Overview
NameFC929045
Unique NameFC929045
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929045 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 45/152 (29.61%), Postives = 81/152 (53.29%), Query Frame = 1
Query:  406 FSLYELQSATNNFSFENLIGKGGYAE---VYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMHIVL-ELSPNGSLAS-LLYGMKEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRDIKAAHILLTED 846
            FS+  +++AT+ F+ EN++ + G      VYKG+L N + +A+KR  R +  +    FL E   +  + +   A LLG   E    +++ E  PN +LA  L +   + +KW +R ++AL +A+ L Y     + R ++ D+ A  +L  +D
Sbjct:   44 FSIETIRNATSGFAAENIVSEHGERAPNVVYKGKLENQRRIAVKRFNRKSWPD-SRQFLEEAKAVGQLRNHRMANLLGCCYEDEERLLIAEFMPNETLAKHLFHWESQPMKWAMRLRVALHIAQALEYCTS--KGRALYHDLNAYRVLFDDD 192          
BLAST of FC929045 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 43/132 (32.58%), Postives = 70/132 (53.03%), Query Frame = 1
Query:  457 LIGKGGYAEVYKGRLRNGQLVAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGI-EGGMHIVLELSPNGSLASLLYGM----KEKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRDIKAAHILL 837
            ++GKG     YK  L  G  V +KRL    A +   +F +++ ++  + HPN   L  Y   +    +V +  P GSL++LL+G     +  L W  R +IA+  A GL +LH     +++H +IKA++ILL
Sbjct:  356 VLGKGSVGTSYKAVLEEGTTVVVKRLKDVMASK--KEFETQMEVVGKIKHPNVIPLRAYYYSKDEKLLVFDFMPTGSLSALLHGSRGSGRTPLDWDNRMRIAITAARGLAHLH--VSAKLVHGNIKASNILL 483          
BLAST of FC929045 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 52/161 (32.30%), Postives = 78/161 (48.45%), Query Frame = 1
Query:  373 NSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQLVAIKRLTR-GTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEGGMH-IVLELSPNGSLASLLYGMK-EKLKWGIRYKIALGVAEGLLYLHEGCQRRIIHRDIKAAHILLTED 846
            N      P   FS   L++ATN+FS EN++       V+KGRL+NG  VAIKR      +D  +  FL E   +  + H     L+GY  +G    +V +   N +LA  L+  K + + W IR ++A  VAE L Y +        + ++ A  +L  ED
Sbjct:   27 NGGGEDPPLTKFSFSALKTATNHFSPENIVSDQTSDVVFKGRLQNGGFVAIKRFNNMAWSDPKL--FLEEAQRVGKLRHKRLVNLIGYCCDGDKRFLVADFMANDTLAKRLFQRKYQTMDWSIRLRVAYFVAEALDYCNTA--GFASYNNLSAYKVLFDED 183          
BLAST of FC929045 vs. ExPASy Swiss-Prot
Match: EPHA3_CHICK (Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.834e-11
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  367 FVNSYDSQSPQKIFSLYELQSATNNFSFENLIGKGGYAEVYKGRLRNGQL----VAIKRLTRGTADEIIADFLSELGIMAHVDHPNTAKLLGYGIEG-GMHIVLELSPNGSLASLLYGMKEKLKWGIRYKIAL--GVAEGLLYLHEGCQRRIIHRDIKAAHILLTED 846
            +V+ +  + P +    +  +   +N S + ++G G + EV  GRL+        VAIK L  G  ++   DFL E  IM   DHPN  +L G   +   + IV E   NGSL S L   K   ++ +   + +  G+A G+ YL +      +HRD+ A +IL+  +
Sbjct:  596 YVDPHTYEDPNQAVHEFAKELDASNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKAGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL--RKHDAQFTVIQLVGMLRGIASGMKYLSD---MGYVHRDLAARNILINSN 757          
The following BLAST results are available for this feature:
BLAST of FC929045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
Y5126_ARATH8.834e-1129.61Probable serine/threonine-protein kinase At5g41260... [more]
Y2267_ARATH8.834e-1132.58Probable inactive receptor kinase At2g26730 OS=Ara... [more]
SSP_ARATH8.834e-1132.30Probable inactive receptor-like kinase SSP OS=Arab... [more]
EPHA3_CHICK8.834e-1129.94Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DD03RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929045 ID=FC929045; Name=FC929045; organism=Citrus clementina; type=EST; length=847bp
ATTTTAGTTTCTTTTTTGACTGAGATAAGAGGACGGGACAAAGAAACAGA
ATTTAGAATGCTCTGTTCTCATCCCCTGTTTCTGGTCCAGATTTTATAAT
ATCTGGACATGGAGAAGAAGGAAGATTCATGCTCGCCGGTTGGGGTTCTT
GAGGACTATTTTCGAAGCGAAGACTCCGAAACATGTTCTTCAAAAGAACC
ATGCTCTGAAACTAAGCCGGAATCCAAATCCAATTCTCGCTGGCATTTAT
TCTACGACTTATTCAGAAACAAATCGAAGAAATCATTAGTCACATTGTAT
CCCCTCAAGCTTTCAATAAGAAGAAGCAGTAGTATGAGAGAGGGCATTGA
TATGCCGAGGAATCTTTTTGTAAATTCCTACGATTCACAGTCTCCCCAGA
AGATTTTCTCCCTCTATGAGCTGCAATCCGCCACCAACAATTTCAGCTTC
GAAAATTTGATTGGAAAGGGAGGTTATGCTGAAGTTTACAAAGGGCGTTT
GAGAAATGGGCAGCTTGTGGCAATCAAACGGCTAACAAGAGGTACAGCAG
ATGAGATTATAGCGGACTTTTTATCGGAGCTTGGGATTATGGCTCATGTC
GATCATCCTAATACTGCTAAGTTATTAGGATATGGGATTGAAGGAGGCAT
GCACATTGTTCTTGAATTGTCTCCTAATGGAAGCTTAGCTTCTCTCCTTT
ATGGTATGAAGGAGAAACTGAAATGGGGTATCAGGTATAAGATTGCGTTA
GGGGTAGCCGAAGGCTTACTTTATCTTCATGAGGGCTGTCAGAGGAGAAT
CATTCATAGAGATATTAAAGCTGCCCATATTTTGCTCACTGAGGACT
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