FC929070

Overview
NameFC929070
Unique NameFC929070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929070_ssr15 microsatellite FC929070_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15033 contig Ccv1_Contig15033:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R  S+R  E+Q   E +  Y+   A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R  S+R  E+Q   E +  Y+   A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            RSKR+LE + L +  K Y +  AI LLKQM S KF E+ E H +  I+P  +DQQ+R T+SLP GTGK
Sbjct:    4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            + RS+RF  +    E  K Y    A++L+K +S+ KF ETAE H  L +DPKY DQQLR TV LPKGTGK
Sbjct:    2 KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRTTVMLPKGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR+ E++ L +  K+YDL  AI L K++++ KF ET E H + NID + +DQQ+R+T++LP GTGK
Sbjct:    5 SKRYNEVRKLVDRNKDYDLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            S+RF E     +  K Y+   A++LLK+ ++ KF ETAE H RL IDPKY DQQLR TV+ PKGTG+
Sbjct:    6 SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVTFPKGTGQ 72          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            S+R  E+Q   E + EY    A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  560 EGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            +  K Y    A+ LLK+ ++ KF ETAEAH RL IDPKY+DQQ+R TVSLPKGTG+
Sbjct:   17 DDSKLYSPLEAMELLKETATAKFDETAEAHIRLGIDPKYSDQQIRTTVSLPKGTGQ 72          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R K++LE+  L E  K YD++ A+ L+++  + KFTET E   RL +DP++ DQQ+R TV LP GTGK
Sbjct:    5 RGKKYLEVAKLVEIGKLYDIREALELVQKTKTAKFTETVEVALRLGVDPRHADQQIRGTVVLPHGTGK 72          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            K Y +  A+S+LK  S+ KF ETAEAH  L ++PKY DQQLRATV LPKGTGK
Sbjct:   18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGK 70          
The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL1_SYNP67.339e-1354.2950S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNE77.339e-1354.2950S ribosomal protein L1 OS=Synechococcus elongatu... [more]
RL1_KOSOT7.339e-1352.9450S ribosomal protein L1 OS=Kosmotoga olearia (str... [more]
RK1_GRATL7.339e-1352.8650S ribosomal protein L1, chloroplastic OS=Gracila... [more]
RL1_THEAB1.252e-1249.2550S ribosomal protein L1 OS=Thermosipho africanus ... [more]
RL1_CYAP71.635e-1253.7350S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ANASP2.135e-1256.7250S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RL1_SYNY33.643e-1260.7150S ribosomal protein L1 OS=Synechocystis sp. (str... [more]
RL1_FUSNN3.643e-1248.5350S ribosomal protein L1 OS=Fusobacterium nucleatu... [more]
RK1_PORYE8.115e-1264.1550S ribosomal protein L1, chloroplastic OS=Porphyr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGTCTTATCTTCTTCTTCTCGGACTTTTTTTCTGGGTAGGTAT
AGCAATTTGCAATAGCAGTGCATATATACAAATTACAAAACTCAAAAAGG
TTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTACTCCGTCGTC
TCTGATGCTAACATACGCCGCCACGCCAGTACACCCGCAAGACTTGACAC
CCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGCGGCTTTCTCA
CTGTGCACCAACCTCAGCGTTAGAGGAGGGGAGAGGAGGGCGAGCAAGTG
GCTTGATTTGTATCCGCTGAGACAGAACAAAAATGGGCTTCCTGGACACA
TGCTGGCGGCTGCTTCTGCTGTCGAAGCTGATACTGACTTGGCCACTGAC
GATGTGGAGGACGATACTCAGGGAGGTGCTGAAGGAGCAACTGCTACTGC
TACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGCAAGGCTGCGT
TGCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCTGGAAATTCAA
AATTTGAGGGAAGGCAAGAAAGAGTATGATTTGAAGACGGCAATATCTTT
GTTGAAGCAGATGTCAAGTACAAAGTTCACGGAAACAGCTGAAGCCCATT
TTCGCCTCAACATTGATCCCAAATACAATGATCAACAGCTTAGAGCAACA
GTGAGTTTACCCAAGGGAACTGGAAAAT
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