FC929070
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2 Query: 518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 R S+R E+Q E + Y+ A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 2 Query: 518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 R S+R E+Q E + Y+ A++LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 2 Query: 524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 RSKR+LE + L + K Y + AI LLKQM S KF E+ E H + I+P +DQQ+R T+SLP GTGK Sbjct: 4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_GRATL (50S ribosomal protein L1, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 2 Query: 518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 + RS+RF + E K Y A++L+K +S+ KF ETAE H L +DPKY DQQLR TV LPKGTGK Sbjct: 2 KKRSRRFSTLLKQIEADKLYSPLDALNLMKNLSNVKFIETAEVHIVLGLDPKYADQQLRTTVMLPKGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_THEAB (50S ribosomal protein L1 OS=Thermosipho africanus (strain TCF52B) GN=rplA PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12 Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 SKR+ E++ L + K+YDL AI L K++++ KF ET E H + NID + +DQQ+R+T++LP GTGK Sbjct: 5 SKRYNEVRKLVDRNKDYDLNEAIDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTIALPHGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 S+RF E + K Y+ A++LLK+ ++ KF ETAE H RL IDPKY DQQLR TV+ PKGTG+ Sbjct: 6 SRRFKEALAKVDQDKAYEPLEALNLLKETATAKFDETAEVHVRLGIDPKYTDQQLRTTVTFPKGTGQ 72
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 S+R E+Q E + EY A+ LLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ Sbjct: 6 SRRLRELQAKVEDR-EYGPLDALGLLKETATAKFGEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2 Query: 560 EGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 + K Y A+ LLK+ ++ KF ETAEAH RL IDPKY+DQQ+R TVSLPKGTG+ Sbjct: 17 DDSKLYSPLEAMELLKETATAKFDETAEAHIRLGIDPKYSDQQIRTTVSLPKGTGQ 72
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_FUSNN (50S ribosomal protein L1 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplA PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2 Query: 524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 R K++LE+ L E K YD++ A+ L+++ + KFTET E RL +DP++ DQQ+R TV LP GTGK Sbjct: 5 RGKKYLEVAKLVEIGKLYDIREALELVQKTKTAKFTETVEVALRLGVDPRHADQQIRGTVVLPHGTGK 72
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_PORYE (50S ribosomal protein L1, chloroplastic OS=Porphyra yezoensis GN=rpl1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 34/53 (64.15%), Postives = 40/53 (75.47%), Query Frame = 2 Query: 569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 K Y + A+S+LK S+ KF ETAEAH L ++PKY DQQLRATV LPKGTGK Sbjct: 18 KLYTINEAVSILKATSNAKFKETAEAHIALGLNPKYADQQLRATVILPKGTGK 70 The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bpback to top |