FC929070
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 2 Query: 524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 ++ R L+ + K Y L A+++L+ S+ KF ETAEAH L ++PKY DQQLRATV LPKGTGK Sbjct: 3 KTSRRLKTLKSKVDPKLYSLNEAVTILRATSNAKFKETAEAHISLGLNPKYADQQLRATVILPKGTGK 70
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2 Query: 569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 + Y+ A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+ PKGTG+ Sbjct: 19 RAYEPLEALTLLKETATAKFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQ 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 2 Query: 530 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 K++ E+ L + +K YD+ A+ L+K+ S TKF T E H L IDPK DQ +R TVSLPKGTGK Sbjct: 6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 SKRF Q E + L+ A+SL+K ++ KF ET EAH RL IDPKY DQQLR TV+LPKGTG+ Sbjct: 5 SKRFKAAQATVEPRAYAPLE-AVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGR 70
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2 Query: 518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 R S+R E+ E + L+ A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+ Sbjct: 2 RKLSRRLRELYAKVEDRPYAPLE-ALQLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 70
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2 Query: 524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 + K+++E L + K YD+ AI L+K+ ++ KF T EA FRL +DP+ NDQQ+R V LP GTGK Sbjct: 4 KGKKYVEAAKLVDRTKAYDVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 SKR + N E ++ Y+ AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+ Sbjct: 5 SKRLASLVNKIE-ERAYEPLEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQ 70
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 2 Query: 569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 K Y AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+ Sbjct: 18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQ 70
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2 Query: 524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 + K+++E L E K YD+ A+SL K+ ++ KF T E FRL +DP+ NDQQ+R V LP GTGK Sbjct: 4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGK 71
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11 Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727 SKR+ EI+ L + +K Y L A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGK Sbjct: 5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGK 71 The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bpback to top |