FC929070

Overview
NameFC929070
Unique NameFC929070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC929070_ssr15 microsatellite FC929070_ssr15:15..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15033 contig Ccv1_Contig15033:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            ++ R L+    +   K Y L  A+++L+  S+ KF ETAEAH  L ++PKY DQQLRATV LPKGTGK
Sbjct:    3 KTSRRLKTLKSKVDPKLYSLNEAVTILRATSNAKFKETAEAHISLGLNPKYADQQLRATVILPKGTGK 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNP2 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            + Y+   A++LLK+ ++ KF ETAEAH RL IDPKY DQQLR TV+ PKGTG+
Sbjct:   19 RAYEPLEALTLLKETATAKFDETAEAHIRLGIDPKYTDQQLRTTVAFPKGTGQ 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PETMO (50S ribosomal protein L1 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rplA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  530 KRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            K++ E+  L + +K YD+  A+ L+K+ S TKF  T E H  L IDPK  DQ +R TVSLPKGTGK
Sbjct:    6 KKYKEVLKLVDKQKNYDIDEALDLVKKTSYTKFDGTVELHVLLGIDPKKGDQNVRGTVSLPKGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKRF   Q   E +    L+ A+SL+K  ++ KF ET EAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    5 SKRFKAAQATVEPRAYAPLE-AVSLVKANATAKFDETIEAHVRLGIDPKYTDQQLRTTVALPKGTGR 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  518 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            R  S+R  E+    E +    L+ A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TV+LPKGTG+
Sbjct:    2 RKLSRRLRELYAKVEDRPYAPLE-ALQLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQ 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_BACLD (50S ribosomal protein L1 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            + K+++E   L +  K YD+  AI L+K+ ++ KF  T EA FRL +DP+ NDQQ+R  V LP GTGK
Sbjct:    4 KGKKYVEAAKLVDRTKAYDVNEAIELVKKTNTAKFDATVEAAFRLGVDPRKNDQQIRGAVVLPNGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR   + N  E ++ Y+   AI L+K+ ++ KF ET EAH RL IDPKY DQQLR TV+LP GTG+
Sbjct:    5 SKRLASLVNKIE-ERAYEPLEAIKLVKENATAKFDETVEAHARLGIDPKYTDQQLRTTVALPHGTGQ 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 2
Query:  569 KEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            K Y    AI L+K+ ++ KF ET EAH RL IDPKY DQQ+R TVSLPKGTG+
Sbjct:   18 KSYAPLEAIQLVKENANAKFDETIEAHIRLGIDPKYTDQQIRTTVSLPKGTGQ 70          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_BACP2 (50S ribosomal protein L1 OS=Bacillus pumilus (strain SAFR-032) GN=rplA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  524 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            + K+++E   L E  K YD+  A+SL K+ ++ KF  T E  FRL +DP+ NDQQ+R  V LP GTGK
Sbjct:    4 KGKKYVEAAKLIERTKAYDVAEAVSLTKKANTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGK 71          
BLAST of FC929070 vs. ExPASy Swiss-Prot
Match: RL1_FERNB (50S ribosomal protein L1 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.084e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  527 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK 727
            SKR+ EI+ L + +K Y L  A+ LLK+ ++ KF ET E H + NID + ++Q +R+T+SLP GTGK
Sbjct:    5 SKRYNEIRKLVDSEKAYTLDEAVELLKKTATAKFDETVEFHIKTNIDYRKSEQNIRSTISLPHGTGK 71          
The following BLAST results are available for this feature:
BLAST of FC929070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK1_PORPU8.115e-1251.4750S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNP21.060e-1160.3850S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PETMO1.060e-1151.5250S ribosomal protein L1 OS=Petrotoga mobilis (str... [more]
RL1_SYNR31.384e-1156.7250S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_THEEB1.808e-1152.8650S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RL1_BACLD1.808e-1147.0650S ribosomal protein L1 OS=Bacillus licheniformis... [more]
RL1_SYNPW2.361e-1153.7350S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMA2.361e-1162.2650S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_BACP22.361e-1147.0650S ribosomal protein L1 OS=Bacillus pumilus (stra... [more]
RL1_FERNB3.084e-1147.7650S ribosomal protein L1 OS=Fervidobacterium nodos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE09RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929070 ID=FC929070; Name=FC929070; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGTCTTATCTTCTTCTTCTCGGACTTTTTTTCTGGGTAGGTAT
AGCAATTTGCAATAGCAGTGCATATATACAAATTACAAAACTCAAAAAGG
TTCCAATACTGTATCCGCAAAATGGCGACATGTGGCACTACTCCGTCGTC
TCTGATGCTAACATACGCCGCCACGCCAGTACACCCGCAAGACTTGACAC
CCTCGCTGTCTCTTCTTTCTTTCAAACCCTCGAAGACTGCGGCTTTCTCA
CTGTGCACCAACCTCAGCGTTAGAGGAGGGGAGAGGAGGGCGAGCAAGTG
GCTTGATTTGTATCCGCTGAGACAGAACAAAAATGGGCTTCCTGGACACA
TGCTGGCGGCTGCTTCTGCTGTCGAAGCTGATACTGACTTGGCCACTGAC
GATGTGGAGGACGATACTCAGGGAGGTGCTGAAGGAGCAACTGCTACTGC
TACTGCTACTGCTACTATTTCAACTAAGCCTAAGAAAGGCAAGGCTGCGT
TGCCTCTCAAGAGAGACAGGACTAGGTCTAAAAGATTCCTGGAAATTCAA
AATTTGAGGGAAGGCAAGAAAGAGTATGATTTGAAGACGGCAATATCTTT
GTTGAAGCAGATGTCAAGTACAAAGTTCACGGAAACAGCTGAAGCCCATT
TTCGCCTCAACATTGATCCCAAATACAATGATCAACAGCTTAGAGCAACA
GTGAGTTTACCCAAGGGAACTGGAAAAT
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