FC929071

Overview
NameFC929071
Unique NameFC929071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC929071 vs. ExPASy Swiss-Prot
Match: PEM1_PHACH (Manganese peroxidase 1 OS=Phanerochaete chrysosporium GN=MNP1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 47/142 (33.10%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  223 GGPFGTMRL--AAEQAHSANNGLDIAVRLLEPFKEQFPTISYADLYQLAGVVGV-EVTGGPDIPFHPGRDDKAEPPQEGRLPDAKQGNDHLRQVFGAQMGLSDKDIVALSGGHTLGRCHK-ERSGFEGPWTRNPLIFDNSYF 636
            GG  G+M L    E   SANNG+D +V  L PF ++  TIS ADL Q AG V +    G P + F  GR +K     +G +P+ +     + Q F    G +  ++V+L   H++ R  K +++    P+   P  FD   F
Sbjct:   82 GGADGSMLLFPTVEPNFSANNGIDDSVNNLIPFMQKHNTISAADLVQFAGAVALSNCPGAPRLEFLAGRPNKTIAAVDGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHSVARADKVDQTIDAAPFDSTPFTFDTQVF 223          
BLAST of FC929071 vs. ExPASy Swiss-Prot
Match: KATG_RHOP5 (Catalase-peroxidase OS=Rhodopseudomonas palustris (strain BisA53) GN=katG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.128e-11
Identity = 61/176 (34.66%), Postives = 80/176 (45.45%), Query Frame = 1
Query:  166 LMLRIAWHSAGTYDVKTKTGGP-FGTMRLAAEQAHSANNGLDIAVRLLEPFKEQFPT-ISYADLYQLAGVVGVEVTGGPDIPFHPGRDDKAEP------PQEGRLPDAK-QGNDHLRQVFGA-QMGL------------------------------SDKDIVAL-SGGHTLGRCH 570
            L +R+AWHSAGTY +    GG   G  R A   +   N  LD A RLL P K+++   IS+ADL+ L+G V +E  G     F  GR D  EP      P+   L D++  G   L    GA QMGL                              +D++ VAL +GGHT G+ H
Sbjct:   90 LFIRLAWHSAGTYRISDGRGGAGAGQQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLFVLSGNVALESMGFKTFGFAGGRADTWEPEELYWGPEGTWLGDSRYSGERELSDPLGAVQMGLIYVNPEGPNGNPDPVGSAKDIRETFYRMAMNDEETVALIAGGHTFGKTH 265          
The following BLAST results are available for this feature:
BLAST of FC929071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
PEM1_PHACH3.128e-1133.10Manganese peroxidase 1 OS=Phanerochaete chrysospor... [more]
KATG_RHOP53.128e-1134.66Catalase-peroxidase OS=Rhodopseudomonas palustris ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH1DE10RM2 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH1DE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929071 ID=FC929071; Name=FC929071; organism=Citrus clementina; type=EST; length=863bp
GGCACGAGGCTCGTTTGTTAAGGATTTGCGTCTCTCTTTCTCATTTCATT
CAGCGTTGAAAAGATGACGAAGAATTACCCCACTGTTAGCGAGGATTACA
AGAAGGCCGTGGAGAAATGCAAGAGGAAGCTCAGAGGCTTCATCGCTGAG
AAGAACTGCGCTCCACTCATGCTCCGTATCGCGTGGCACTCAGCTGGTAC
ATATGATGTGAAGACCAAGACCGGAGGTCCATTCGGAACCATGAGGCTCG
CTGCTGAGCAGGCACACTCAGCCAACAACGGCCTCGATATTGCCGTTAGG
CTTTTGGAGCCGTTCAAGGAGCAGTTCCCTACCATCTCCTACGCTGACCT
TTATCAGCTTGCTGGTGTTGTTGGCGTTGAGGTTACCGGTGGGCCCGATA
TCCCCTTCCACCCGGGAAGAGATGACAAGGCTGAGCCACCTCAAGAAGGC
CGGCTTCCTGATGCTAAACAGGGTAATGATCACTTGAGGCAAGTCTTTGG
TGCTCAGATGGGCCTCAGCGACAAGGATATTGTTGCTCTCTCTGGTGGCC
ACACCCTGGGAAGGTGCCACAAGGAGAGGTCTGGATTTGAGGGACCATGG
ACCCGCAACCCTCTCATTTTTGACAATTCCTACTTCACGGAGCTCTTGAC
TGGTGAGAANGATGGTCTTCTGCAATTGCCATCCGACAAGGCCCTTCTGG
ATGACCCTGTTTTCCGCCCTCTTGTTGAGAAATATGCTGCGGATGAAGAC
GCTTTCTTCGCTGATTATGCTGAGGCTCATCTCAAGCTCTCTGAGCTAGG
ATTTGCTGAAGCCTAAATTTACCTGAGTAATAAATGGGTTGGAATGATGC
CCACAACAGTGTG
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