FC929080

Overview
NameFC929080
Unique NameFC929080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.252e-55
Identity = 106/169 (62.72%), Postives = 133/169 (78.70%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRMN 744
            F++  EAKL+F+IRI+GIN + PK +KILQLLRL QI NGVF++V KA   M+  VEP+V YGYPNLKSVKELIYKRG+GK+NKQR+ALTDN IIE+  G++GIICMED I EI TVGP+FK+A+NFLWPF           ++   ++EGGD GNRE++IN LIR+MN
Sbjct:   80 FHIPAEAKLIFLIRIKGINKIPPKPRKILQLLRLLQINNGVFVRVTKATAEMIKIVEPWVAYGYPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 3.083e-54
Identity = 105/168 (62.50%), Postives = 126/168 (75.00%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQ-HGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL F++RIRGIN V PK +K+LQL RLRQI NGVF+K+NKA +NML   EPY+T+GYPNLKSV+ELIYKRGF K N+QR+ +TDNF+IE+   Q H I C+ED + EI TVGP+FK A+NFLWPF           K N YV GGD GNRED IN L+R+M
Sbjct:   84 FYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 9.919e-53
Identity = 101/168 (60.12%), Postives = 124/168 (73.81%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 744
            FYV P AK+ F+IRIRGIN V PK +K+L+LLRL Q+ NGVF+K+NKA +NML  VEPYV YG+PNLKS+KELIYKRG  K++ QRI LT N ++E+  G+ GIIC+ED I EI T G HFK+ NN LWPF           K+ P+++GGDAGNRE  IN LI RMN
Sbjct:   79 FYVPPAAKVAFVIRIRGINGVSPKPRKVLKLLRLLQLNNGVFVKLNKASINMLKLVEPYVAYGFPNLKSIKELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.097e-51
Identity = 100/168 (59.52%), Postives = 128/168 (76.19%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRM 744
            +YV  E KL+F+IRIRGIN + PK +KI+QLLRL QI NGVF+K NKA   ML  VEPYVTYG PNLK+V+EL+YKRGFGK+NKQRIAL+DN IIE A G++ I+ +ED I EI TVGP+FK+A NF+WPF           ++   ++EGGDAG R+++IN L+R+M
Sbjct:   83 YYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.191e-51
Identity = 98/170 (57.65%), Postives = 126/170 (74.12%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            FYV  E KL+F+IRI+GI+ + PK +K+LQLLRL QI NGVF+++ KA   +L  VEPY+ +GYPNL SV++L+YKRG+GK+NKQRI L+DN IIE+A G++GIICMED I EI TVGP FK+A+NFLWPF           +R    Y+EGG  GNRE+ IN LI+  N
Sbjct:   81 FYVPAEPKLVFVIRIKGISKMAPKPRKVLQLLRLHQINNGVFVRITKATAELLRIVEPYIAFGYPNLASVRQLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.284e-51
Identity = 95/167 (56.89%), Postives = 122/167 (73.05%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  E K+ F++RIRGIN + PK +K LQ+LRLRQI NGVF+K+NKA L +L  +EPYV +GYPN K++ +L+YKRG+ K++  R+ +TDN I+EQ+ G+  IIC+ED   EI TVGPHFKEA NFLWPF           K N +VEGGD GNRED IN L+R+M
Sbjct:   77 FYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.859e-50
Identity = 91/170 (53.53%), Postives = 127/170 (74.71%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F+IRI+GIN + PK +K+LQLLRL QI +GVF+KV KA   +L  VEPYV YGYP+  ++++L+YKRG+GK+NKQRIAL++N I+E   G++GII ++D I EI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   74 YYVESQPKLVFVIRIKGINKIAPKPRKVLQLLRLNQINSGVFVKVTKATTELLRLVEPYVAYGYPSYSTIRQLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREEFINKLVKSMN 243          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 2.987e-49
Identity = 88/170 (51.76%), Postives = 126/170 (74.12%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KA L +L  +EPYV YGYP+  ++++L+YKRGFGK+NKQR+ L+DN IIE   G++GI+ ++D I EI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   75 YYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKAMN 244          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 195.282 bits (495), Expect = 2.987e-49
Identity = 88/170 (51.76%), Postives = 126/170 (74.12%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KA L +L  +EPYV YGYP+  ++++L+YKRGFGK+NKQR+ L+DN IIE   G++GI+ ++D I EI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE++IN+L++ MN
Sbjct:   75 YYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.901e-49
Identity = 96/168 (57.14%), Postives = 126/168 (75.00%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRM 744
            ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTYG PN K+V+ELIYKRGFGK+NKQRI L+DN IIE A G++ I+ +ED I EI TVGP+FK+A NFLWPF           ++   ++EGGDAG R+++IN L+++M
Sbjct:   82 YFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
The following BLAST results are available for this feature:
BLAST of FC929080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_NEUCR1.252e-5562.7260S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]
RL7_DROME3.083e-5462.5060S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_DICDI9.919e-5360.1260S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7C_SCHPO1.097e-5159.5260S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_YARLI3.191e-5157.6560S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_CAEEL9.284e-5156.8960S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7_ASHGO7.859e-5053.5360S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7B_YEAST2.987e-4951.7660S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST2.987e-4951.7660S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7B_SCHPO3.901e-4957.1460S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CB09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929080 ID=FC929080; Name=FC929080; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCGG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCGGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAAGGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCAGGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAA
AGCCTGTTCGATGATAAAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGAAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGGGG
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
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