FC929080

Overview
NameFC929080
Unique NameFC929080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length744
Libraries
Library NameType
PhII-IIIV1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.936e-48
Identity = 89/169 (52.66%), Postives = 126/169 (74.56%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRRMN 744
            +YV+ + KL+F++RI+GIN + PK +K+LQLLRL QI  GVF+++ KA   +L   EPY+ YGYPNL +++ L+YKRG GK+NKQRIAL+DN IIE   G++GI+ +ED I EI TVGP+FK+ANNFLWPF           ++   +++GGD GNRE++IN L+++MN
Sbjct:   73 YYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.313e-48
Identity = 89/170 (52.35%), Postives = 123/170 (72.35%), Query Frame = -1
Query:  241 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR--NPYVEGGDAGNREDYINELIRRMN 744
            +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KA   +L  +EPYV YGYP+  +V++L+YKRG GK+NKQRIAL+DN I+E   G+ GI+ ++D I EI+TVGPHFK+ANNFLWPF            R    +++GG  GNRE +IN+L++ MN
Sbjct:   75 YYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.255e-47
Identity = 90/167 (53.89%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKA + M+ +VEPYVTYGYP+   +K LIYKRG+ K+N QRI +T+N +IEQ  G+ GI  +ED I EI TVGPHFKEAN FLW F           KR  ++  GD GNRED IN+L++RM
Sbjct:   81 FYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.255e-47
Identity = 90/167 (53.89%), Postives = 120/167 (71.86%), Query Frame = -1
Query:  244 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRM 744
            FYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKA + M+ +VEPYVTYGYP+   +K LIYKRG+ K+N QRI +T+N +IEQ  G+ GI  +ED I EI TVGPHFKEAN FLW F           KR  ++  GD GNRED IN+L++RM
Sbjct:   81 FYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.534e-40
Identity = 88/166 (53.01%), Postives = 112/166 (67.47%), Query Frame = -1
Query:  247 YVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NPYVEGGDAGNREDYINELIRR 741
            +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRGFGK+N QRIAL+DN +IE+A G++ +I +ED I EI  VG HFKE   FLWPF           K+   + EG  AG   + INELI++
Sbjct:   82 FVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.899e-36
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = -1
Query:  241 EAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNP-YVEGGDAGNREDYINELIRRMN 729
            ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN IIEQA G+H I+ +ED + EI  VG HF+E   FL P            ++   + EGGD GNRED IN+LI +MN
Sbjct:   84 KSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.333e-32
Identity = 72/160 (45.00%), Postives = 99/160 (61.88%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F+IR+  I  V    K  +  L L+++F+GVF+KV    + ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN +IE+  G+ G+IC+ED I EI   G HF+E ++FL PF           +     E G  G R D IN+LIR++N
Sbjct:   87 LAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.808e-31
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN +IE+  G+ G+IC+ED I EI   G HF+E + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   87 LAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.668e-31
Identity = 73/160 (45.62%), Postives = 100/160 (62.50%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN +IE+  G+ G+IC+ED I EI   G HF+E + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   87 LAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of FC929080 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.484e-29
Identity = 68/160 (42.50%), Postives = 98/160 (61.25%), Query Frame = -1
Query:  241 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKAPLNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNFIIEQAFGQHGIICMEDFIPEILTVGPHFKEANNFLWPFXXXXXXXXXXXKRNPYVEGGDAGNREDYINELIRRMN 720
            L F++RI  I+ V    ++ +  LRL++IF+GVF++V    +  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN +IE+  G+ G+IC+ED I EI   G +F+  + FL PF           +     E G  G R + IN+LIR++N
Sbjct:   88 LAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of FC929080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_DEBHA1.936e-4852.6660S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7_CANGA4.313e-4852.3560S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL72_PARTE1.255e-4753.8960S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE1.255e-4753.8960S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO2.534e-4053.0160S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH2.899e-3648.7860S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_MOUSE4.333e-3245.0060S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN2.808e-3145.6360S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PONAB3.668e-3145.6360S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_PIG4.484e-2942.5060S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CB09RM1 PhII-IIIV1 Citrus clementina cDNA clone KN0AAH3CB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC929080 ID=FC929080; Name=FC929080; organism=Citrus clementina; type=EST; length=744bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACATGAAAACAAAAAA
TAAAATTTGGAATGATAATCCAGTCTGAAGCCAAAATAACAACACTGTCA
CTGTTATAAAAAGTAAAAAAGTTTCTACTTAACTTCCAGGGAAAAGGCGG
GGAATAATAGGAAACACTAAAAGCCAAAATTTAAAATATTGATCACATCA
AAACTTCTTCAAAAGGGGTAGGATATTCTGCAAAAGCCTAGTTCATCCTT
CTGATGAGCTCATTGATGTAATCTTCACGGTTTCCGGCATCACCGCCTTC
AACATAGGGGTTCCTCTTCTTCTTCAGGCCACCCAAGGGGGCCTTGAGCT
TGAAGGGCCATAGGAAGTTGTTTGCCTCCTTGAAGTGAGGACCAACAGTC
AAAATCTCAGGGATGAAATCTTCCATGCAAATAATTCCATGCTGCCCAAA
AGCCTGTTCGATGATAAAATTGTCGGTCAAAGCAATCCTCTGCTTATTTA
ATTTGCCGAAACCCCTCTTGTAAATCAGTTCTTTGACACTCTTTAAATTG
GGGTACCCATATGTTACATAGGGCTCAACTCTGTGCAGCATATTGAGGGG
GGCTTTGTTCACTTTCAAAAAGACACCATTAAAAATCTGTCTCAAACGGA
GAAGCTGCAAAATTTTCTTGGTCTTTGGATCAACAGCATTGATACCGCGA
ATCCTGATAATGAACAAAAGCTTAGCTTCTGGGTTGACATAAAA
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